BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0534800 Os05g0534800|Os05g0534800
(550 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0534800 Arf GTPase activating protein family protein 1080 0.0
Os02g0208900 Similar to ZIGA2 protein (Fragment) 213 3e-55
Os01g0813900 Similar to ZIGA1 protein (Fragment) 188 8e-48
Os03g0323500 Arf GTPase activating protein family protein 188 1e-47
Os07g0563800 Arf GTPase activating protein family protein 84 2e-16
>Os05g0534800 Arf GTPase activating protein family protein
Length = 550
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/550 (94%), Positives = 520/550 (94%)
Query: 1 MGSRVKEEERNERAIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREFTHR 60
MGSRVKEEERNERAIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREFTHR
Sbjct: 1 MGSRVKEEERNERAIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREFTHR 60
Query: 61 VKSISMAKFTSQEVSALQEGGNERGKEIYLKHWDFQGQPLPDIRSATKPDDYHRLLIDVD 120
VKSISMAKFTSQEVSALQEGGNERGKEIYLKHWDFQGQPLPDIRSATKPDDYHRLLIDVD
Sbjct: 61 VKSISMAKFTSQEVSALQEGGNERGKEIYLKHWDFQGQPLPDIRSATKPDDYHRLLIDVD 120
Query: 121 RLRNFIKIVYVDRRFTAERIGNHQPQAKGSRDDTYRNNNIDSSRGVQRGPYGGTSEDNHG 180
RLRNFIKIVYVDRRFTAERIGNHQPQAKGSRDDTYRNNNIDSSRGVQRGPYGGTSEDNHG
Sbjct: 121 RLRNFIKIVYVDRRFTAERIGNHQPQAKGSRDDTYRNNNIDSSRGVQRGPYGGTSEDNHG 180
Query: 181 PQHSTASTSEDQNNLNKHPVPAKVDQKXXXXXXXXXXXXGKHQYLDGLQKTGGSSENNLK 240
PQHSTASTSEDQNNLNKHPVPAKVDQK GKHQYLDGLQKTGGSSENNLK
Sbjct: 181 PQHSTASTSEDQNNLNKHPVPAKVDQKNRTTTERENANTGKHQYLDGLQKTGGSSENNLK 240
Query: 241 DTTKXXXXXXEPSKETNRKVLPIRLPDPPRSHKATTSTTPAEIQKVVPPRAADPSSKTTT 300
DTTK EPSKETNRKVLPIRLPDPPRSHKATTSTTPAEIQKVVPPRAADPSSKTTT
Sbjct: 241 DTTKSVSSVVEPSKETNRKVLPIRLPDPPRSHKATTSTTPAEIQKVVPPRAADPSSKTTT 300
Query: 301 DVKLEISKSLIDFDSDFEPHQGFGQTEVQKSSPLPDVGWATFDDTTPKXXXXXXXXXXXX 360
DVKLEISKSLIDFDSDFEPHQGFGQTEVQKSSPLPDVGWATFDDTTPK
Sbjct: 301 DVKLEISKSLIDFDSDFEPHQGFGQTEVQKSSPLPDVGWATFDDTTPKNATATSISSTNS 360
Query: 361 LNGPLVQILNSVSAPQISFPTRQSTKSLSFSQANNGSQQNQFFFRPTDNIQSYSSPLNRA 420
LNGPLVQILNSVSAPQISFPTRQSTKSLSFSQANNGSQQNQFFFRPTDNIQSYSSPLNRA
Sbjct: 361 LNGPLVQILNSVSAPQISFPTRQSTKSLSFSQANNGSQQNQFFFRPTDNIQSYSSPLNRA 420
Query: 421 NSAPVNSQLWGAASQASIQGSHALPSNHGSNILAGTLASQRPAVDTTSSRGKALPEDIFT 480
NSAPVNSQLWGAASQASIQGSHALPSNHGSNILAGTLASQRPAVDTTSSRGKALPEDIFT
Sbjct: 421 NSAPVNSQLWGAASQASIQGSHALPSNHGSNILAGTLASQRPAVDTTSSRGKALPEDIFT 480
Query: 481 MSYHPYAANWDWRANPQLNMGYGQYNMQYPVGAANFIVQQHDVKVTHQMQNASFPINQSH 540
MSYHPYAANWDWRANPQLNMGYGQYNMQYPVGAANFIVQQHDVKVTHQMQNASFPINQSH
Sbjct: 481 MSYHPYAANWDWRANPQLNMGYGQYNMQYPVGAANFIVQQHDVKVTHQMQNASFPINQSH 540
Query: 541 LPQVGGNPFF 550
LPQVGGNPFF
Sbjct: 541 LPQVGGNPFF 550
>Os02g0208900 Similar to ZIGA2 protein (Fragment)
Length = 728
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 135/219 (61%), Gaps = 25/219 (11%)
Query: 1 MGSRVKEEERNERAIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREFTHR 60
M SR+KE+ERNER IR LLKLP N+RCINCN+LGPQYVCT+F TF+C +CSG HREFTHR
Sbjct: 1 MASRLKEDERNERIIRGLLKLPANKRCINCNNLGPQYVCTNFWTFICTNCSGAHREFTHR 60
Query: 61 VKSISMAKFTSQEVSALQEGGNERGKEIYLKHWDFQGQPLPDIRSATKPDDYHRLLIDVD 120
KS+SMAKFT+QEVSALQEGGNER +EI+ K WD PD +A D
Sbjct: 61 AKSVSMAKFTAQEVSALQEGGNERAREIFFKEWDAHRNSFPDSSNA-------------D 107
Query: 121 RLRNFIKIVYVDRRFTAERIGNHQPQAKGSRDDTYRNNNIDSSRGVQRGP---------- 170
+LRNFIK VYV+RR+T ER + P+ K +D+ N D + G R P
Sbjct: 108 KLRNFIKHVYVERRYTGERSADRPPRGKDDKDEYSENRRSDGNWGGSRSPPYNESYSDRR 167
Query: 171 -YGGTSED-NHGPQHSTASTSEDQNNLNKHPVPAKVDQK 207
Y G S+D N + S + N+ K P +VD +
Sbjct: 168 SYSGRSDDRNSRYSYGERSPGYEHNDYKKSPRYFEVDDR 206
>Os01g0813900 Similar to ZIGA1 protein (Fragment)
Length = 801
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 123/181 (67%), Gaps = 20/181 (11%)
Query: 1 MGSRVKEEERNERAIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREFTHR 60
MGSR +EEERNE+ IR L+KLP NR+CINCNS+GPQYVCT+F TF+C+SCSGIHREFTHR
Sbjct: 1 MGSR-REEERNEKIIRGLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREFTHR 59
Query: 61 VKSISMAKFTSQEVSALQEGGNERGKEIYLKHWDFQGQPLPDIRSATKPDDYHRLLIDVD 120
VKS+SMAKFT+QEV +L++GGN+R ++IYLK WD+Q LPD + D
Sbjct: 60 VKSVSMAKFTTQEVRSLEQGGNQRARDIYLKDWDWQRMRLPDNS-------------NPD 106
Query: 121 RLRNFIKIVYVDRRF----TAERIGNHQPQAKGSRDDTYRNNNIDSSRGVQRGPYGGTSE 176
R+R FI+ VYVD+++ + ++ N K S + T R ++ S Q PY E
Sbjct: 107 RIREFIRAVYVDKKYAGGKSTDKPVNDSESVKSSENLTRRPSSYHSYS--QSPPYDFQYE 164
Query: 177 D 177
D
Sbjct: 165 D 165
>Os03g0323500 Arf GTPase activating protein family protein
Length = 540
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 101/143 (70%), Gaps = 13/143 (9%)
Query: 6 KEEERNERAIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREFTHRVKSIS 65
KEEERNER +R LLKLP NRRCINCN LGPQYVCTSF TFVC+SCSGIHREFTHRVKS+S
Sbjct: 8 KEEERNERVVRGLLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREFTHRVKSVS 67
Query: 66 MAKFTSQEVSALQEGGNERGKEIYLKHWDFQGQPLPDIRSATKPDDYHRLLIDVDRLRNF 125
M+ FT+QEV ALQ GGN+R +E +LK +D Q LPD +VD LR F
Sbjct: 68 MSTFTTQEVEALQNGGNQRARESFLKEFDAQKMRLPDSS-------------NVDSLREF 114
Query: 126 IKIVYVDRRFTAERIGNHQPQAK 148
IK VYV+RR+ R P+ K
Sbjct: 115 IKAVYVERRYAGGRFSERPPRDK 137
>Os07g0563800 Arf GTPase activating protein family protein
Length = 476
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 25/159 (15%)
Query: 10 RNERAIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREF---THRVKSISM 66
++++ + LL+LP NR C +C S GP++ + F+C+ CSGIHR +V+S ++
Sbjct: 14 KHKKILEGLLRLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
Query: 67 AKFTSQEVSALQEGGNERGKEIYLKHWDFQGQPLPDIRSATKPDDYHRLLIDVDRLRNFI 126
+ ++V+ +Q GNE+ +W+ A P +Y R+ I+ NFI
Sbjct: 74 DTWLPEQVAFIQSMGNEKSNS----YWE-----------AELPPNYDRVGIE-----NFI 113
Query: 127 KIVYVDRRFTAERIGNHQPQAKGSRDDTYRNNNIDSSRG 165
+ Y D+R+ R G+ +P + G+RD+ + +RG
Sbjct: 114 RAKYEDKRWIP-RNGSSRPSS-GARDEKSSESQTSVNRG 150
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,189,936
Number of extensions: 811752
Number of successful extensions: 1984
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1985
Number of HSP's successfully gapped: 5
Length of query: 550
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 444
Effective length of database: 11,501,117
Effective search space: 5106495948
Effective search space used: 5106495948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)