Os05g0534800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Arf GTPase activating protein family protein.
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Os05g0534800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Arf GTPase activating protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.3 | 0.365 | 10.3 | -0.0422 | 1.53 | 0.845 | -0.305 | -1.02 | 0.347 | 6.69 | 10.69 | 6610 | -- | -- |
| 61.17 | 0.364 | 10.3 | 0.172 | 1.53 | 0.931 | -0.251 | -- | 0.397 | 6.7 | 8.973 | 6630 | -- | -- |
| 60.52 | 0.362 | 10.3 | -0.0556 | 1.52 | 0.845 | -- | -1.03 | 0.343 | 6.7 | 10.4 | 6748 | -- | -- |
| 61.37 | 0.365 | 10.3 | 0.173 | 1.53 | 0.916 | -- | -- | 0.404 | 6.72 | 9.329 | 6676 | -- | -- |
| 178.52 | 0.622 | 10.4 | 0.0108 | -- | 0.926 | -- | -0.621 | 0.324 | -- | 10.74 | 8551 | -- | -- |
| 74.88 | 0.406 | 10.2 | 0.625 | 1.52 | -- | -0.308 | -- | 0.628 | 6.59 | -- | -- | -- | -- |
| 75.12 | 0.406 | 10.2 | 0.62 | 1.52 | -- | -- | -- | 0.629 | 6.59 | -- | -- | -- | -- |
| 178.78 | 0.623 | 10.3 | 0.127 | -- | 0.992 | -- | -- | 0.364 | -- | 9.576 | 8558 | -- | -- |
| 61.87 | 0.366 | 10.3 | -- | 1.52 | 0.961 | -- | -- | 0.346 | 6.72 | 11.9 | 9467 | -- | -- |
| 195.02 | 0.653 | 10.3 | 0.657 | -- | -- | -- | -- | 0.66 | -- | -- | -- | -- | -- |
| 85.25 | 0.432 | 10.2 | -- | 1.52 | -- | -- | -- | 0.56 | 6.57 | -- | -- | -- | -- |
| 178.89 | 0.623 | 10.3 | -- | -- | 1.07 | -- | -- | 0.365 | -- | 10.1 | 7114 | -- | -- |
| 206.4 | 0.671 | 10.3 | -- | -- | -- | -- | -- | 0.587 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.63 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 10 | 58.75 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 12 | 58.76 | radiation | 40 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 33 | 59.31 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 35 | 59.57 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 50 | 59.91 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 51 | 59.92 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 52 | 59.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 55 | 60.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 58 | 60.04 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 61 | 60.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 65 | 60.14 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 66 | 60.14 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 88 | 60.26 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 98 | 60.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 102 | 60.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 120 | 60.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 126 | 60.42 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 142 | 60.45 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 152 | 60.49 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 214 | 60.60 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 225 | 60.62 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 243 | 60.65 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 267 | 60.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 23 |
| 283 | 60.71 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 23 |
| 296 | 60.74 | temperature | 10 | 4320 | > th | dose dependent | sin | 3 | NA |
| 319 | 60.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 23 |
| 331 | 60.79 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 359 | 60.79 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 369 | 60.81 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 405 | 60.86 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 463 | 60.93 | wind | 5 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 494 | 60.96 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 502 | 60.97 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 522 | 60.98 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 16 |
| 582 | 61.02 | temperature | 30 | 4320 | < th | dose dependent | sin | 5 | NA |
| 583 | 61.02 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 618 | 61.04 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 16 |
| 712 | 61.08 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 720 | 61.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 16 |
| 725 | 61.08 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 23 |
| 764 | 61.10 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 23 |
| 815 | 61.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 16 |
| 827 | 61.14 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 895 | 61.18 | wind | 1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 897 | 61.18 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 982 | 61.22 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 1000 | 61.23 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 2 |