Os03g0323500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Arf GTPase activating protein family protein.
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Os03g0323500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Arf GTPase activating protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.66 | 0.607 | 7.67 | 0.382 | 2.28 | 0.451 | -1.38 | 5.22 | 1.09 | 1.64 | 0.1127 | 4678 | -- | -- |
| 167.43 | 0.603 | 7.67 | 0.775 | 2.28 | 0.881 | -1.48 | -- | 1.2 | 1.92 | 0.2293 | 13389 | -- | -- |
| 174.2 | 0.615 | 7.66 | 0.436 | 2.28 | 0.395 | -- | 5.25 | 1.09 | 1.65 | 0.4997 | 4659 | -- | -- |
| 170.09 | 0.607 | 7.69 | 0.406 | 2.31 | 1.12 | -- | -- | 1.18 | 1.66 | 0.5229 | 17033 | -- | -- |
| 490.16 | 1.03 | 7.65 | 0.456 | -- | 0.376 | -- | 5.91 | 1.1 | -- | 0.4973 | 4839 | -- | -- |
| 194.63 | 0.654 | 7.73 | 0.764 | 2.3 | -- | -1.25 | -- | 1.05 | 1.64 | -- | -- | -- | -- |
| 200.81 | 0.664 | 7.73 | 0.804 | 2.31 | -- | -- | -- | 1.06 | 1.68 | -- | -- | -- | -- |
| 494.38 | 1.04 | 7.68 | 0.479 | -- | 1.15 | -- | -- | 1.22 | -- | 0.5938 | 13452 | -- | -- |
| 172.26 | 0.611 | 7.7 | -- | 2.34 | 1.35 | -- | -- | 1.17 | 1.69 | 0.7856 | 17244 | -- | -- |
| 524.66 | 1.07 | 7.7 | 0.898 | -- | -- | -- | -- | 1.11 | -- | -- | -- | -- | -- |
| 217.85 | 0.69 | 7.75 | -- | 2.32 | -- | -- | -- | 0.968 | 1.69 | -- | -- | -- | -- |
| 499.59 | 1.04 | 7.68 | -- | -- | 1.33 | -- | -- | 1.19 | -- | 0.7187 | 13465 | -- | -- |
| 545.91 | 1.09 | 7.72 | -- | -- | -- | -- | -- | 1.01 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 2 | 152.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 3 | 152.94 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 16 | 153.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 17 | 154.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 18 | 154.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 20 | 154.04 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 21 | 154.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 25 | 154.12 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 26 | 154.12 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 61 | 155.40 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 70 | 155.74 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 101 | 156.33 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 104 | 156.35 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 122 | 156.51 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 125 | 156.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 132 | 156.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 134 | 156.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 135 | 156.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 139 | 156.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 156 | 156.83 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 160 | 156.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 168 | 156.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 170 | 156.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 187 | 157.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 190 | 157.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 191 | 157.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 192 | 157.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 193 | 157.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 195 | 157.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 208 | 157.31 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 19 |
| 212 | 157.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 213 | 157.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 223 | 157.39 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 230 | 157.44 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 232 | 157.44 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 23 | 19 |
| 276 | 157.76 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 283 | 157.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 342 | 158.20 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 359 | 158.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 360 | 158.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 363 | 158.30 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 364 | 158.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 385 | 158.43 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 386 | 158.43 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 392 | 158.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 403 | 158.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 519 | 158.99 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 551 | 159.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 21 |
| 607 | 159.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 609 | 159.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 614 | 159.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 616 | 159.39 | precipitation | 0.1 | 14400 | > th | dose independent | no | NA | NA |
| 617 | 159.39 | precipitation | 0.1 | 14400 | < th | dose independent | no | NA | NA |
| 620 | 159.39 | precipitation | 0.1 | 14400 | < th | dose dependent | no | NA | NA |
| 630 | 159.44 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 640 | 159.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 642 | 159.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 657 | 159.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 672 | 159.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 680 | 159.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 684 | 159.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 685 | 159.63 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 778 | 159.95 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 782 | 159.95 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 789 | 159.97 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 800 | 159.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 804 | 160.01 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 844 | 160.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 845 | 160.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 852 | 160.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 867 | 160.20 | wind | 1.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 889 | 160.26 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 896 | 160.30 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 904 | 160.32 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 907 | 160.32 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 939 | 160.42 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 6 |