BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0323500 Os03g0323500|AK066439
(540 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08680.4 | chr1:2762820-2768387 FORWARD LENGTH=652 313 1e-85
AT4G13350.1 | chr4:7770170-7773321 REVERSE LENGTH=603 182 3e-46
AT4G32630.2 | chr4:15738315-15741412 FORWARD LENGTH=629 175 7e-44
AT5G54310.1 | chr5:22057262-22061066 REVERSE LENGTH=484 84 2e-16
AT3G17660.1 | chr3:6037717-6039092 FORWARD LENGTH=233 66 5e-11
AT3G07940.1 | chr3:2529542-2531368 FORWARD LENGTH=386 64 2e-10
AT2G37550.1 | chr2:15755544-15757456 REVERSE LENGTH=457 61 2e-09
AT3G53710.1 | chr3:19903730-19905419 REVERSE LENGTH=460 60 3e-09
AT4G05330.1 | chr4:2720772-2722679 REVERSE LENGTH=337 56 5e-08
AT2G35210.1 | chr2:14836206-14837946 FORWARD LENGTH=396 55 1e-07
AT4G21160.1 | chr4:11284694-11286532 FORWARD LENGTH=338 53 5e-07
>AT1G08680.4 | chr1:2762820-2768387 FORWARD LENGTH=652
Length = 651
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 186/403 (46%), Positives = 232/403 (57%), Gaps = 34/403 (8%)
Query: 19 GLLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREFTHRVKSVSMSTFTTQEVEA 78
GL+KLPPNRRCINCN LGPQYVCT+FWTFVC++CSGIHREFTHRVKSVSMS FT++EVE
Sbjct: 17 GLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRVKSVSMSKFTSKEVEV 76
Query: 79 LQNGGNQRARESFLKEFDAQKMRLPDSSNVDSLREFIKAVYVERRYAGGRFSERPPRDKQ 138
LQNGGNQRARE +LK +D Q+ RLP++SN + +REFIK VYV+++YAG +++P +D Q
Sbjct: 77 LQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGANDADKPSKDSQ 136
Query: 139 NQKNNEQEHRRASSYHSFSQSPPYDYQYEERRNGKQSVMLTRKPGSDRGHDGKMSGFAYS 198
+ ++E RRA+SYHS+SQSPPYDYQYEERR GK + T K S +G K S F YS
Sbjct: 137 DHVSSEDMTRRANSYHSYSQSPPYDYQYEERRYGKIPLGFTGKSASVKGLHAKASSFVYS 196
Query: 199 PQSLHERMSEDRFANENSGPRISDCSGSSISNTFRTTPHSPNFLDKG-CSSPSMQQNQSN 257
P + M ED+F+NE+S PR SD S SS + FR+ SPNF + SP Q SN
Sbjct: 197 PGRFSDHMFEDQFSNEDSAPRASDYSVSSAGDPFRSDIQSPNFQQEAEFRSPQFQ--HSN 254
Query: 258 IQASSGI---TQSERTISTGNIDX------XXXXXXXXXLADMFFESDIAHRTQQTKDCI 308
S + Q +RT S+G++ L + ES +QQ K
Sbjct: 255 APPSENLFPGRQHQRTTSSGSVRSVDSNFMSIKSYTSGGLGEAVSESRQNTGSQQGKTSN 314
Query: 309 TPSFTAFSDVANIAQKDLLNEPVA-------------------QQQPVTGLDQPVDFFAS 349
A S A I L PVA QQ P T P + FA
Sbjct: 315 HVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIAPRSPPVNLQQAPQTYSFTPANSFAG 374
Query: 350 MPPATPSTDRMLTAAPSMDNAGWATFDTP-PEEKQPGVIGLSG 391
P++ +AP N GWA+FD P P K VI G
Sbjct: 375 NLGQQPTSRPSELSAPK--NEGWASFDNPMPAAKSTNVITSPG 415
>AT4G13350.1 | chr4:7770170-7773321 REVERSE LENGTH=603
Length = 602
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 125/195 (64%), Gaps = 17/195 (8%)
Query: 20 LLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREFTHRVKSVSMSTFTTQEVEAL 79
LLKLP N+RCINCN LGPQYVCT+FWTFVC +CSGIHREFTHRVKS+SM+ FT+QEV AL
Sbjct: 18 LLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVTAL 77
Query: 80 QNGGNQRARESFLKEFDAQKMRLPDSSNVDSLREFIKAVYVERRYAGGRFSERPPRDKQN 139
+ GGNQ A++ + K D Q+ +PD SNV+ LR+FI+ VYV +RY N
Sbjct: 78 KEGGNQHAKDIYFKGLDQQRQSVPDGSNVERLRDFIRHVYVNKRYT-------------N 124
Query: 140 QKNNEQEHRRASSYHSFSQSPPYDYQYEERRNGKQSVMLTRKPGSDRGHDGKMSGF--AY 197
+KN+++ S S+SPPY+ Y +RR G +S R PG + G ++
Sbjct: 125 EKNDDKSPSETRSSSG-SRSPPYEDGY-DRRYGDRSSPGGRSPGFETGSRNAVNNRKSPA 182
Query: 198 SPQSLHERMSEDRFA 212
P+ L++ EDRF
Sbjct: 183 RPEILNDWRREDRFG 197
>AT4G32630.2 | chr4:15738315-15741412 FORWARD LENGTH=629
Length = 628
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 104/134 (77%), Gaps = 3/134 (2%)
Query: 20 LLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREFTHRVKSVSMSTFTTQEVEAL 79
LLKLP NRRCINCN LGPQYVC++FWTFVC++CSGIHREFTHRVKSVSM+ FT EV AL
Sbjct: 14 LLKLPENRRCINCNSLGPQYVCSTFWTFVCVNCSGIHREFTHRVKSVSMAKFTADEVSAL 73
Query: 80 QNGGNQRARESFLKEFDAQKMRLPDSSNVDSLREFIKAVYVERRYAGGRFSERPPRDKQN 139
+ GGN+RAR+ + KE+DA + PD SN+ LR+FI++VYV++RY+ S++ + K +
Sbjct: 74 RAGGNERARQIYFKEWDAHRDGYPDRSNIFKLRDFIRSVYVDKRYSS---SDKISQQKSD 130
Query: 140 QKNNEQEHRRASSY 153
+ +E ++ S++
Sbjct: 131 VTEDYRESKKTSAH 144
>AT5G54310.1 | chr5:22057262-22061066 REVERSE LENGTH=484
Length = 483
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 14/156 (8%)
Query: 19 GLLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREF---THRVKSVSMSTFTTQE 75
GLLK P NR C +C GP++ + F+C+ CSGIHR +V+S ++ T+ ++
Sbjct: 21 GLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQ 80
Query: 76 VEALQNGGNQRARESFLKEFDAQKMRLPDSSNVDSLREFIKAVYVERRYAG-GRFSERPP 134
V +Q+ GN +A + E LP + + + FI+A Y E+R+ G + PP
Sbjct: 81 VAFIQSMGNDKANSYWEAE-------LPPNYDRVGIENFIRAKYEEKRWVSRGEKARSPP 133
Query: 135 RDKQNQKNNEQEHRRASSYHSFSQSPPYDYQYEERR 170
R +Q ++ + + R Y S P + +EER+
Sbjct: 134 RVEQERRKSVE--RSGPGYEHGHSSSPVNL-FEERK 166
>AT3G17660.1 | chr3:6037717-6039092 FORWARD LENGTH=233
Length = 232
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 19 GLLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREF---THRVKSVSMSTFTTQE 75
LLK P NR C +C P++ + F+C+ CSGIHR +V+S+++ T+ +
Sbjct: 21 ALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLDTWLPDQ 80
Query: 76 VEALQNGGNQRARESFLKEFDAQKMRLPDSSNVDSLREFIKAVYVERRYA 125
V +++ GN + E + E LP S FI+A Y E+R+
Sbjct: 81 VAFMKSTGNAKGNEYWESE-------LPQHFERSSSDTFIRAKYSEKRWV 123
>AT3G07940.1 | chr3:2529542-2531368 FORWARD LENGTH=386
Length = 385
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 20 LLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREF---THRVKSVSMSTFTTQEV 76
LLK P N+ C +C P++V S F+CI CSG+HR +V SV + +T +V
Sbjct: 53 LLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQV 112
Query: 77 EALQN-GGNQRARESFLK-EFDAQKMRLPDSSNVDSLREFIKAVYVERRY 124
+ L GGN E F D K PDS+N + +FI+ Y + ++
Sbjct: 113 DMLVGYGGNTAVNERFEACNIDQSKKPKPDSTN-EERNDFIRKKYEQHQF 161
>AT2G37550.1 | chr2:15755544-15757456 REVERSE LENGTH=457
Length = 456
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 18/132 (13%)
Query: 20 LLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREFTHR---VKSVSMSTFTTQEV 76
L P N+ C++C+ PQ+ S+ F+C+ CSG HR V+SV+M +++ ++
Sbjct: 10 LQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQI 69
Query: 77 EALQNGGNQRARESFLKEFDAQK----MRLPDSSNVDSLREFIKAVYVERRY-------- 124
+ + GGN+R +FL ++ K + +S+ R+ I+A+ R++
Sbjct: 70 KKMDAGGNERL-NNFLAQYGISKETDIISKYNSNAASVYRDRIQALAEGRQWRDPPIVKE 128
Query: 125 --AGGRFSERPP 134
GG +++PP
Sbjct: 129 SVGGGLMNKKPP 140
>AT3G53710.1 | chr3:19903730-19905419 REVERSE LENGTH=460
Length = 459
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 20 LLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREFTHR---VKSVSMSTFTTQEV 76
L P N+ C++C PQ+ S+ F+C+ CSG HR V+SV+M +++ ++
Sbjct: 10 LQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSAIQI 69
Query: 77 EALQNGGNQRARESFLKEFDAQKMRLPDSSNVDSLREFIKAVYVER--RYAGGRFSERPP 134
+ ++ GGN+R L +F AQ ++ + +VY +R A GR PP
Sbjct: 70 KKMEAGGNER-----LNKFFAQYGIAKETDIISKYNSNAASVYRDRIQALAEGRPWNDPP 124
Query: 135 RDKQNQK 141
K+ K
Sbjct: 125 VVKEANK 131
>AT4G05330.1 | chr4:2720772-2722679 REVERSE LENGTH=337
Length = 336
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 20 LLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREF-TH--RVKSVSMSTFTTQEV 76
LL P NR C +C P++ + F+C+ C G+HR TH +V SV++ ++ +EV
Sbjct: 21 LLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDEEV 80
Query: 77 EALQNGGNQRARESFLKEFDAQKMRLPDSS-------NVDSLREFIKAVY 119
+++ G + S + F LPD+ N D FI+A Y
Sbjct: 81 DSMIEIGGNASANSIYEAF------LPDTCSKPGPDVNHDQRMRFIRAKY 124
>AT2G35210.1 | chr2:14836206-14837946 FORWARD LENGTH=396
Length = 395
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 26 NRRCINCNGLGPQYVCTSFWTFVCISCSGIHREFTHR---VKSVSMSTFTTQEVEALQNG 82
N+ C +CN P + ++ F+CI CS +HR V+S ++ ++++++++ + G
Sbjct: 22 NKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYG 81
Query: 83 GNQRARESFLKEF 95
GN RA + F K++
Sbjct: 82 GNNRA-QVFFKQY 93
>AT4G21160.1 | chr4:11284694-11286532 FORWARD LENGTH=338
Length = 337
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 20 LLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREF---THRVKSVSMSTFTTQEV 76
LL NR C +C P++ + F+C+ C G+HR +V SV++ ++ +EV
Sbjct: 21 LLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEV 80
Query: 77 EA-LQNGGNQRAR---ESFLKEFDAQKMRLPDSSNVDSLREFIKAVYVERRY 124
++ ++ GGN A E+F+ E ++ PD+S+ +R FI++ Y + +
Sbjct: 81 DSMIEIGGNASANSIYEAFIPEGSSKPG--PDASHDQRMR-FIRSKYEHQEF 129
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.125 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,816,624
Number of extensions: 505415
Number of successful extensions: 1251
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1247
Number of HSP's successfully gapped: 11
Length of query: 540
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 437
Effective length of database: 8,282,721
Effective search space: 3619549077
Effective search space used: 3619549077
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)