BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0529900 Os05g0529900|Os05g0529900
(325 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0529900 Protein of unknown function DUF284, transmembr... 642 0.0
Os03g0120100 Protein of unknown function DUF284, transmembr... 494 e-140
Os02g0173800 Protein of unknown function DUF284, transmembr... 409 e-114
Os06g0665000 Protein of unknown function DUF284, transmembr... 406 e-113
Os03g0785500 Protein of unknown function DUF284, transmembr... 364 e-101
Os09g0560600 Protein of unknown function DUF284, transmembr... 354 5e-98
>Os05g0529900 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 325
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/325 (96%), Positives = 313/325 (96%)
Query: 1 MKPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGE 60
MKPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGE
Sbjct: 1 MKPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGE 60
Query: 61 CVTANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQLR 120
CVTANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQLR
Sbjct: 61 CVTANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQLR 120
Query: 121 SKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSSDR 180
SKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFS IAWSSDR
Sbjct: 121 SKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSVNKKTVQVNKKNIAWSSDR 180
Query: 181 TIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDIM 240
TIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDIM
Sbjct: 181 TIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDIM 240
Query: 241 ASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVGL 300
ASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVGL
Sbjct: 241 ASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVGL 300
Query: 301 NMVKPRTLGDPSYLSWNKENPDYVQ 325
NMVKPRTLGDPSYLSWNKENPDYVQ
Sbjct: 301 NMVKPRTLGDPSYLSWNKENPDYVQ 325
>Os03g0120100 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 340
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/322 (72%), Positives = 266/322 (82%), Gaps = 1/322 (0%)
Query: 2 KPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGEC 61
KPKYSKFTQQELPA KPL TPGIV+ F LIGIIF+PIGL S++ASQE+VELVD+YD C
Sbjct: 16 KPKYSKFTQQELPACKPLLTPGIVVATFLLIGIIFVPIGLASLSASQEIVELVDRYDTNC 75
Query: 62 VTANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQLRS 121
V+ DKVGFIQ+T TDK CTRT+TVPK MK PIQ+YYQ+ +FYQNHRRYVKSRSDKQLR
Sbjct: 76 VSTLDKVGFIQNTDTDKTCTRTLTVPKHMKSPIQIYYQIGDFYQNHRRYVKSRSDKQLRY 135
Query: 122 KEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSSDRT 181
K + K CDPE + GAPI+PCGLIAWSLFNDT+T S IAW SD+T
Sbjct: 136 KNAVHLTKDCDPEGNTVDGAPIIPCGLIAWSLFNDTYTISVNKKAIEVNKKDIAWKSDKT 195
Query: 182 IKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDIMA 241
KFGSD++P NFQKG LIGG +LNE +PLSEQEDLIVWMRTAALPTFRKLYGRIETDIMA
Sbjct: 196 DKFGSDIYPSNFQKGSLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGRIETDIMA 255
Query: 242 SDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVG-L 300
+D++TVVIQNNYNTYSFGG+KALVLSTTSWIGGKNNFIG AY+ IG + +A+ FV L
Sbjct: 256 NDQLTVVIQNNYNTYSFGGSKALVLSTTSWIGGKNNFIGVAYLTIGGLCIFLAVGFVVLL 315
Query: 301 NMVKPRTLGDPSYLSWNKENPD 322
MVKPRTLGDPSYLSWN++ PD
Sbjct: 316 YMVKPRTLGDPSYLSWNRDTPD 337
>Os02g0173800 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 350
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/322 (61%), Positives = 239/322 (74%), Gaps = 4/322 (1%)
Query: 2 KPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGEC 61
KPKYSKFTQQELPA KP+ TP VI F L+G+IF+PIGLVS+ AS++VVE+VD+YD C
Sbjct: 28 KPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDRYDDAC 87
Query: 62 VTAN--DKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQL 119
V AN DK+ +IQ+ K C RT+ VPK M PI VYYQL+NFYQNHRRYVKSRSD QL
Sbjct: 88 VPANTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKSRSDAQL 147
Query: 120 RSKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSSD 179
R + ++ TCDPE + G A IVPCGLIAWS+FNDT+ F I+W SD
Sbjct: 148 RDPKKANDTSTCDPEGTANGMA-IVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNISWKSD 206
Query: 180 RTIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDI 239
R KFG DVFP+NFQ G LIGG L+ LS+QEDLIVWMRTAALPTFRKLYGRI TD+
Sbjct: 207 REHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGRIHTDL 266
Query: 240 MASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVG 299
D ITV ++NNYNTYSF G K LVLST++W+GGKN+F+G AY+++G + F +A AF
Sbjct: 267 KKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGLCFFLAFAFTL 326
Query: 300 LNMVKPRTLGDPSYLSWNKENP 321
L ++KPR +GD +YLSWN+ NP
Sbjct: 327 LYLIKPRKMGDNNYLSWNR-NP 347
>Os06g0665000 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 358
Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/320 (59%), Positives = 236/320 (73%), Gaps = 3/320 (0%)
Query: 3 PKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGECV 62
PKYSKFTQQELPA KP+ TP V+ F L+G+IF+P+G+VS+ A+Q VVE+VD+YD CV
Sbjct: 35 PKYSKFTQQELPACKPILTPKWVVSVFFLVGVIFVPVGVVSLLAAQNVVEIVDRYDDACV 94
Query: 63 TAN---DKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQL 119
AN +K+ +IQ+ K CTRT+T+ + M PI VYYQL+NFYQNHRRYVKSR+D QL
Sbjct: 95 PANMTDNKLAYIQNPNISKECTRTLTITEDMNQPIFVYYQLDNFYQNHRRYVKSRNDGQL 154
Query: 120 RSKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSSD 179
R ++ C+PE + G PIVPCGLIAWSLFNDT++F+ I+W SD
Sbjct: 155 RDAAKANQTSACEPEKTTADGKPIVPCGLIAWSLFNDTYSFTRGNENLTVDKKDISWKSD 214
Query: 180 RTIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDI 239
R KFG +V+P NFQ G L GGG L+ +PLSEQEDLIVWMRTAALPTFRKLYGRI D+
Sbjct: 215 REHKFGKNVYPSNFQNGLLKGGGTLDPAIPLSEQEDLIVWMRTAALPTFRKLYGRIYVDL 274
Query: 240 MASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVG 299
+D ITV + NNYNTY+FGG K LVLST +W+GGKN+F+GFAYV +G + F +A AF
Sbjct: 275 KKNDTITVKLSNNYNTYNFGGKKKLVLSTATWLGGKNDFLGFAYVIVGGVCFFLAFAFTL 334
Query: 300 LNMVKPRTLGDPSYLSWNKE 319
L ++KPR LGD +YLSWN+
Sbjct: 335 LYLIKPRKLGDHNYLSWNRH 354
>Os03g0785500 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 351
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/321 (53%), Positives = 226/321 (70%), Gaps = 5/321 (1%)
Query: 5 YSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGECVT- 63
+ +FTQQ LPAWKP TPG VI F +IG+ F+P+GLV + AS V E+ +YD +CV
Sbjct: 32 FYRFTQQNLPAWKPAMTPGCVITIFLMIGVTFVPVGLVCLHASNHVAEIAHRYDIDCVPN 91
Query: 64 --ANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQLRS 121
++ +I+D+ K CT+ + V M+ PI VYY+L+NFYQNHRRYVKSRSDKQLR
Sbjct: 92 AYKRNRQAYIKDSSISKNCTQEVKVKYLMRAPIYVYYELDNFYQNHRRYVKSRSDKQLRY 151
Query: 122 KEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSSDRT 181
+ +CDP ++G PIVPCGLIAWSLFNDT+ F+ I+W SDR
Sbjct: 152 GQ-KYTHSSCDPIERNDG-LPIVPCGLIAWSLFNDTYGFTCGSTEIKVNRKNISWKSDRE 209
Query: 182 IKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDIMA 241
KFG DV+P NFQ G LIGGG+L+ LPL++QEDLIVWMRTAALP FRKLYG IE D+ A
Sbjct: 210 HKFGKDVYPFNFQNGSLIGGGKLDPALPLNQQEDLIVWMRTAALPQFRKLYGVIEEDLQA 269
Query: 242 SDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVGLN 301
+ IT+ I NNYNTYSFGG K+L+L+T++W+GGKN+F+G+AY+ G++S + + F ++
Sbjct: 270 DEIITMHIANNYNTYSFGGKKSLILTTSTWLGGKNDFLGYAYLITGSLSLFLTILFALIH 329
Query: 302 MVKPRTLGDPSYLSWNKENPD 322
+ PR GD +YLSWN+ N +
Sbjct: 330 VKNPRPHGDANYLSWNRPNSN 350
>Os09g0560600 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 351
Score = 354 bits (909), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 171/291 (58%), Positives = 208/291 (71%), Gaps = 6/291 (2%)
Query: 2 KPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGEC 61
+PKY +FTQQEL A KP+ P VI +G+IFIPIGL IAAS +VVELVD+YD +C
Sbjct: 27 RPKYHRFTQQELQACKPILIPQTVILVLVFVGLIFIPIGLACIAASNKVVELVDRYDTKC 86
Query: 62 VTAN---DKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQ 118
V N +KV FIQ++ DK CTR VPK MK PI +YYQL+ FYQNHRRYVKS +D Q
Sbjct: 87 VPRNMLRNKVAFIQNSSIDKTCTRVFKVPKDMKKPIYIYYQLDKFYQNHRRYVKSLNDMQ 146
Query: 119 LRSKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXX--IAW 176
LR+ + + + C PEA + G PIVPCGLIAWSLFNDT++F+ I+W
Sbjct: 147 LRNPKKVADTQYCSPEATANG-RPIVPCGLIAWSLFNDTYSFTRGHGNETLRVNKDGISW 205
Query: 177 SSDRTIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIE 236
S+R +FG +V+P+NFQ G LIGGGQLN PLSEQEDLIVWMR AALPTFRKLYGRI+
Sbjct: 206 KSERNRRFGKNVYPKNFQNGTLIGGGQLNPSKPLSEQEDLIVWMRIAALPTFRKLYGRID 265
Query: 237 TDIMASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIG 287
D+ A D + V +QNNYN+YSF G K+LVLST W+GGKN F+G AY +G
Sbjct: 266 MDLQAGDRVEVTMQNNYNSYSFNGKKSLVLSTAGWLGGKNAFLGRAYAIVG 316
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,037,747
Number of extensions: 429607
Number of successful extensions: 852
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 224
Effective length of database: 11,762,187
Effective search space: 2634729888
Effective search space used: 2634729888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)