Os02g0173800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF284, transmembrane eukaryotic family protein.
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Os02g0173800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF284, transmembrane eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.3 | 0.473 | 8.84 | 0.0597 | 0.506 | 0.836 | 0.807 | -0.574 | 0.163 | 14.9 | 20.28 | 1500 | -- | -- |
| 101.34 | 0.469 | 8.83 | 0.146 | 0.537 | 0.879 | 0.645 | -- | 0.175 | 14.5 | 20.6 | 1214 | -- | -- |
| 101.98 | 0.47 | 8.84 | 0.0239 | 0.553 | 0.804 | -- | -0.639 | 0.159 | 14.3 | 20.5 | 1185 | -- | -- |
| 102.58 | 0.472 | 8.82 | 0.191 | 0.564 | 0.865 | -- | -- | 0.181 | 14.1 | 20.6 | 1153 | -- | -- |
| 113.31 | 0.496 | 8.84 | 0.118 | -- | 0.697 | -- | -0.422 | 0.166 | -- | 20.4 | 216 | -- | -- |
| 118.89 | 0.511 | 8.78 | 0.526 | 0.487 | -- | 0.911 | -- | 0.378 | 15 | -- | -- | -- | -- |
| 121.24 | 0.516 | 8.78 | 0.546 | 0.49 | -- | -- | -- | 0.382 | 14.4 | -- | -- | -- | -- |
| 111.61 | 0.492 | 8.82 | 0.28 | -- | 0.823 | -- | -- | 0.216 | -- | 20.38 | 203 | -- | -- |
| 103.39 | 0.474 | 8.83 | -- | 0.558 | 0.941 | -- | -- | 0.151 | 14.2 | 20.5 | 1186 | -- | -- |
| 135.42 | 0.544 | 8.78 | 0.525 | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
| 129.09 | 0.531 | 8.79 | -- | 0.479 | -- | -- | -- | 0.322 | 14.4 | -- | -- | -- | -- |
| 113.64 | 0.496 | 8.81 | -- | -- | 0.872 | -- | -- | 0.203 | -- | 20.4 | 214 | -- | -- |
| 142.7 | 0.558 | 8.8 | -- | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.49 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 6 |
| 2 | 96.63 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 11 |
| 3 | 96.76 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 13 |
| 16 | 97.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 19 | 97.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 24 | 97.79 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 19 |
| 30 | 97.87 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 88 | 98.54 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 22 |
| 99 | 98.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 101 | 98.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 116 | 98.80 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 18 |
| 173 | 99.09 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 251 | 99.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 446 | 100.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 463 | 100.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 543 | 100.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 587 | 101.07 | temperature | 20 | 10 | > th | dose independent | sin | 7 | NA |
| 607 | 101.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 616 | 101.17 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 619 | 101.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 622 | 101.18 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 21 |
| 654 | 101.29 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 665 | 101.33 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 671 | 101.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 686 | 101.39 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 17 |
| 704 | 101.45 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 21 |
| 716 | 101.47 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 21 |
| 718 | 101.47 | temperature | 20 | 270 | < th | dose independent | rect. | 7 | 23 |
| 721 | 101.48 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 733 | 101.51 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 12 |
| 739 | 101.52 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 19 |
| 749 | 101.54 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 17 |
| 761 | 101.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 763 | 101.57 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 19 |
| 771 | 101.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 6 |
| 801 | 101.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 802 | 101.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 12 |
| 805 | 101.64 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 20 |
| 826 | 101.67 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 862 | 101.72 | temperature | 20 | 90 | < th | dose independent | sin | 9 | NA |
| 904 | 101.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 927 | 101.79 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 20 |
| 934 | 101.80 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 937 | 101.80 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 19 |