BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0173800 Os02g0173800|AK069063
(350 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12740.1 | chr3:4049739-4051561 FORWARD LENGTH=351 467 e-132
AT1G54320.1 | chr1:20275732-20277793 REVERSE LENGTH=350 458 e-129
AT1G79450.1 | chr1:29887831-29889904 FORWARD LENGTH=351 447 e-126
AT1G16360.1 | chr1:5593493-5595179 REVERSE LENGTH=337 437 e-123
AT5G46150.2 | chr5:18708735-18710424 REVERSE LENGTH=344 396 e-111
>AT3G12740.1 | chr3:4049739-4051561 FORWARD LENGTH=351
Length = 350
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 222/329 (67%), Positives = 265/329 (80%), Gaps = 2/329 (0%)
Query: 23 RRNTRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDR 82
RRN+++PKYSKFTQQELPACKPILTP WVIS F+++ VIF+P+G++SL AS+ VVEIVDR
Sbjct: 23 RRNSKRPKYSKFTQQELPACKPILTPGWVISTFLIISVIFIPLGVISLFASQDVVEIVDR 82
Query: 83 YDDACVP-ANTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKS 141
YD AC+P ++ +K+AYIQ T +K+C RTL VPK M PI+VYYQL+NFYQNHRRYVKS
Sbjct: 83 YDSACIPLSDRANKVAYIQG-TGNKSCTRTLIVPKRMKQPIYVYYQLENFYQNHRRYVKS 141
Query: 142 RSDAQLRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNI 201
RSD+QLR K N C PE G IVPCGLIAWS+FNDTY RN++ L V+KK I
Sbjct: 142 RSDSQLRSVKDENQIDACKPEDDFGGQPIVPCGLIAWSLFNDTYVLSRNNQGLTVNKKGI 201
Query: 202 SWKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGR 261
+WKSD+EHKFG++VFPKNFQ G+L GG +LDPNK LS QEDLIVWMRTAALPTFRKLYG+
Sbjct: 202 AWKSDKEHKFGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPTFRKLYGK 261
Query: 262 IHTDLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXXXXX 321
I +DL+KG+ I VTL+NNYNTYSFSGKKKLVLST++WLGGKNDFLG+AYL+VGG
Sbjct: 262 IESDLEKGENIQVTLQNNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFVLA 321
Query: 322 XXXXXXXXIKPRKMGDNNYLSWNRNPAGR 350
+KPR++GD YLSWNR P GR
Sbjct: 322 LAFTVMYLVKPRRLGDPTYLSWNRIPGGR 350
>AT1G54320.1 | chr1:20275732-20277793 REVERSE LENGTH=350
Length = 349
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/329 (66%), Positives = 258/329 (78%), Gaps = 2/329 (0%)
Query: 23 RRNTRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDR 82
R+N+++PKYSKFTQQELPACKPILTP WVIS F++V VIF+P+G++SL AS+ VVEIVDR
Sbjct: 22 RKNSKRPKYSKFTQQELPACKPILTPGWVISTFLIVSVIFIPLGVISLFASQDVVEIVDR 81
Query: 83 YDDACVPANT-TDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKS 141
YD C+PA T+K+AYIQ K C R LKV K M PI+VYYQL+NFYQNHRRYVKS
Sbjct: 82 YDTECIPAPARTNKVAYIQGDG-DKVCNRDLKVTKRMKQPIYVYYQLENFYQNHRRYVKS 140
Query: 142 RSDAQLRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNI 201
RSD+QLR K N S C PE G IVPCGLIAWS+FNDTY RN+ +L V+KK I
Sbjct: 141 RSDSQLRSTKYENQISACKPEDDVGGQPIVPCGLIAWSLFNDTYALSRNNVSLAVNKKGI 200
Query: 202 SWKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGR 261
+WKSD+EHKFG VFPKNFQ G++ GG TLDP LS+QEDLIVWMRTAALPTFRKLYG+
Sbjct: 201 AWKSDKEHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPTFRKLYGK 260
Query: 262 IHTDLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXXXXX 321
I +DL+ GDTI V L NNYNTYSF+GKKKLVLST++WLGGKNDFLG+AYL+VGG
Sbjct: 261 IESDLEMGDTIHVKLNNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFILA 320
Query: 322 XXXXXXXXIKPRKMGDNNYLSWNRNPAGR 350
+KPR++GD +YLSWNRNP GR
Sbjct: 321 LAFTIMYLVKPRRLGDPSYLSWNRNPGGR 349
>AT1G79450.1 | chr1:29887831-29889904 FORWARD LENGTH=351
Length = 350
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 208/328 (63%), Positives = 261/328 (79%), Gaps = 2/328 (0%)
Query: 23 RRNTRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDR 82
++ +++PKYS+FTQQELPACKPILTP+WVI F++ GV+F+P+G++ L AS+ VVEIVDR
Sbjct: 22 KKTSKRPKYSRFTQQELPACKPILTPRWVILTFLVAGVVFIPLGVICLFASQGVVEIVDR 81
Query: 83 YDDACVPANTTDKL-AYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKS 141
YD C+P ++ + + AYIQ K C+RT+ V K M P++VYYQL+NFYQNHRRYVKS
Sbjct: 82 YDTDCIPTSSRNNMVAYIQGEG-DKICKRTITVTKAMKHPVYVYYQLENFYQNHRRYVKS 140
Query: 142 RSDAQLRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNI 201
R+DAQLR PK+ +D TC PE G IVPCGL+AWS+FNDTY F RNS+ L V+KK I
Sbjct: 141 RNDAQLRSPKEEHDVKTCAPEDNVGGEPIVPCGLVAWSLFNDTYSFSRNSQQLLVNKKGI 200
Query: 202 SWKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGR 261
SWKSDRE+KFG++VFPKNFQ G+ IGG TL+ +K LS+QEDLIVWMRTAALPTFRKLYG+
Sbjct: 201 SWKSDRENKFGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPTFRKLYGK 260
Query: 262 IHTDLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXXXXX 321
I TDL GDTITV L+NNYNTYSF+G+KKLVLST++WLGG+NDFLG+AYL+VG
Sbjct: 261 IETDLHAGDTITVLLQNNYNTYSFNGQKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLA 320
Query: 322 XXXXXXXXIKPRKMGDNNYLSWNRNPAG 349
+KPR++GD +YLSWNR+ G
Sbjct: 321 VTFAVLYLVKPRQLGDPSYLSWNRSAGG 348
>AT1G16360.1 | chr1:5593493-5595179 REVERSE LENGTH=337
Length = 336
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/319 (64%), Positives = 252/319 (78%), Gaps = 2/319 (0%)
Query: 32 SKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDRYDDACVPAN 91
S+FTQQELPACKPILTPKWVI F++ GV+F+P+G++ L AS+ V+EIVDRYD C+P +
Sbjct: 17 SRFTQQELPACKPILTPKWVILTFLVSGVVFIPLGVICLFASQGVIEIVDRYDTDCIPLS 76
Query: 92 TTD-KLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKSRSDAQLRDP 150
+ D K+ YIQ K C RT+ V K M P++VYYQL+N+YQNHRRYVKSR D QLR P
Sbjct: 77 SRDNKVRYIQGLE-DKRCNRTITVTKTMKNPVYVYYQLENYYQNHRRYVKSRQDGQLRSP 135
Query: 151 KKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNISWKSDREHK 210
K ++T +C PE T G IVPCGL+AWS+FNDTY F RN++ LPV+KK+ISWKSDRE K
Sbjct: 136 KDEHETKSCAPEDTLGGQPIVPCGLVAWSLFNDTYDFTRNNQKLPVNKKDISWKSDRESK 195
Query: 211 FGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGRIHTDLKKGD 270
FG++VFPKNFQ GSLIGGK+LD + LS+QEDLIVWMRTAALPTFRKLYG+I TDL+ GD
Sbjct: 196 FGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAGD 255
Query: 271 TITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXXXXXXXXXXXXXI 330
TI V L+NNYNTYSF+GKKKLVLST++WLGG+NDFLG+AYL+VG
Sbjct: 256 TIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVSFSVLYLA 315
Query: 331 KPRKMGDNNYLSWNRNPAG 349
KPR++GD +YLSWNR+ G
Sbjct: 316 KPRQLGDPSYLSWNRSAGG 334
>AT5G46150.2 | chr5:18708735-18710424 REVERSE LENGTH=344
Length = 343
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/323 (59%), Positives = 235/323 (72%), Gaps = 4/323 (1%)
Query: 24 RNTRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDRY 83
R+ R +F QQ+LPACKP+LTP VI+VF+L+G +F+PIGL++L+ASR +EI+DRY
Sbjct: 19 RSRRSKALYQFKQQKLPACKPVLTPISVITVFMLMGFVFIPIGLITLRASRDAIEIIDRY 78
Query: 84 DDACVPAN-TTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKSR 142
D C+P T+KL YI + +I KNC R LKV K M APIF+YYQLDN+YQNHRRYVKSR
Sbjct: 79 DVECIPEEYRTNKLLYITDSSIPKNCTRYLKVQKYMKAPIFIYYQLDNYYQNHRRYVKSR 138
Query: 143 SDAQLRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNIS 202
SD QL + + TS+C+PE ++NG+ IVPCGLIAWS+FNDT+ F R L V + NI+
Sbjct: 139 SDQQLLHGLEYSHTSSCEPEESSNGLPIVPCGLIAWSMFNDTFTFSRERTKLNVSRNNIA 198
Query: 203 WKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGRI 262
WKSDREHKFG++V+P NFQNG+LIGG LDP LS QED IVWMR AAL +FRKLYGRI
Sbjct: 199 WKSDREHKFGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRI 258
Query: 263 HTDLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXXXXXX 322
DL+ G + V L NNYNTYSFSG+KKL+LSTS WLGG+NDFLG+ YL VG
Sbjct: 259 EEDLEPGKVVEVNLMNNYNTYSFSGQKKLILSTSNWLGGRNDFLGITYLVVGSSSIVISI 318
Query: 323 XXXXXXXIKPRKMGDNNYLSWNR 345
PR GDN SWN+
Sbjct: 319 IFMLLHLKNPRPYGDN---SWNK 338
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,606,083
Number of extensions: 324339
Number of successful extensions: 595
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 5
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)