BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0173800 Os02g0173800|AK069063
(350 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0173800 Protein of unknown function DUF284, transmembr... 644 0.0
Os06g0665000 Protein of unknown function DUF284, transmembr... 515 e-146
Os03g0120100 Protein of unknown function DUF284, transmembr... 413 e-115
Os05g0529900 Protein of unknown function DUF284, transmembr... 408 e-114
Os09g0560600 Protein of unknown function DUF284, transmembr... 407 e-114
Os03g0785500 Protein of unknown function DUF284, transmembr... 394 e-110
>Os02g0173800 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 350
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/329 (95%), Positives = 315/329 (95%)
Query: 22 PRRNTRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVD 81
PRRNTRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVD
Sbjct: 22 PRRNTRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVD 81
Query: 82 RYDDACVPANTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKS 141
RYDDACVPANTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKS
Sbjct: 82 RYDDACVPANTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKS 141
Query: 142 RSDAQLRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNI 201
RSDAQLRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNI
Sbjct: 142 RSDAQLRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNI 201
Query: 202 SWKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGR 261
SWKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGR
Sbjct: 202 SWKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGR 261
Query: 262 IHTDLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXXXXX 321
IHTDLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGG
Sbjct: 262 IHTDLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGLCFFLA 321
Query: 322 XXXXXXXXIKPRKMGDNNYLSWNRNPAGR 350
IKPRKMGDNNYLSWNRNPAGR
Sbjct: 322 FAFTLLYLIKPRKMGDNNYLSWNRNPAGR 350
>Os06g0665000 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 358
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/330 (75%), Positives = 276/330 (83%), Gaps = 2/330 (0%)
Query: 23 RRNTRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDR 82
RRNT+ PKYSKFTQQELPACKPILTPKWV+SVF LVGVIFVP+G+VSL A++ VVEIVDR
Sbjct: 29 RRNTKMPKYSKFTQQELPACKPILTPKWVVSVFFLVGVIFVPVGVVSLLAAQNVVEIVDR 88
Query: 83 YDDACVPANTTD-KLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKS 141
YDDACVPAN TD KLAYIQNP ISK C RTL + +DM+ PIFVYYQLDNFYQNHRRYVKS
Sbjct: 89 YDDACVPANMTDNKLAYIQNPNISKECTRTLTITEDMNQPIFVYYQLDNFYQNHRRYVKS 148
Query: 142 RSDAQLRDPKKANDTSTCDPE-GTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKN 200
R+D QLRD KAN TS C+PE TA+G IVPCGLIAWS+FNDTY F R ++NL VDKK+
Sbjct: 149 RNDGQLRDAAKANQTSACEPEKTTADGKPIVPCGLIAWSLFNDTYSFTRGNENLTVDKKD 208
Query: 201 ISWKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYG 260
ISWKSDREHKFG++V+P NFQNG L GG TLDP LS+QEDLIVWMRTAALPTFRKLYG
Sbjct: 209 ISWKSDREHKFGKNVYPSNFQNGLLKGGGTLDPAIPLSEQEDLIVWMRTAALPTFRKLYG 268
Query: 261 RIHTDLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXXXX 320
RI+ DLKK DTITV L NNYNTY+F GKKKLVLST+TWLGGKNDFLG AY+ VGG
Sbjct: 269 RIYVDLKKNDTITVKLSNNYNTYNFGGKKKLVLSTATWLGGKNDFLGFAYVIVGGVCFFL 328
Query: 321 XXXXXXXXXIKPRKMGDNNYLSWNRNPAGR 350
IKPRK+GD+NYLSWNR+P GR
Sbjct: 329 AFAFTLLYLIKPRKLGDHNYLSWNRHPGGR 358
>Os03g0120100 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 340
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/330 (59%), Positives = 247/330 (74%), Gaps = 4/330 (1%)
Query: 23 RRNTRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDR 82
+++ KPKYSKFTQQELPACKP+LTP V++ F+L+G+IFVPIGL SL AS+++VE+VDR
Sbjct: 11 QKSNNKPKYSKFTQQELPACKPLLTPGIVVATFLLIGIIFVPIGLASLSASQEIVELVDR 70
Query: 83 YDDACVPANTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKSR 142
YD CV +T DK+ +IQN K C RTL VPK M +PI +YYQ+ +FYQNHRRYVKSR
Sbjct: 71 YDTNCV--STLDKVGFIQNTDTDKTCTRTLTVPKHMKSPIQIYYQIGDFYQNHRRYVKSR 128
Query: 143 SDAQLRDPKKANDTSTCDPEG-TANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNI 201
SD QLR + T CDPEG T +G I+PCGLIAWS+FNDTY N K + V+KK+I
Sbjct: 129 SDKQLRYKNAVHLTKDCDPEGNTVDGAPIIPCGLIAWSLFNDTYTISVNKKAIEVNKKDI 188
Query: 202 SWKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGR 261
+WKSD+ KFG D++P NFQ GSLIGG L+ + LS+QEDLIVWMRTAALPTFRKLYGR
Sbjct: 189 AWKSDKTDKFGSDIYPSNFQKGSLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGR 248
Query: 262 IHTDLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXX-XX 320
I TD+ D +TV ++NNYNTYSF G K LVLST++W+GGKN+F+G+AYL++GG
Sbjct: 249 IETDIMANDQLTVVIQNNYNTYSFGGSKALVLSTTSWIGGKNNFIGVAYLTIGGLCIFLA 308
Query: 321 XXXXXXXXXIKPRKMGDNNYLSWNRNPAGR 350
+KPR +GD +YLSWNR+ R
Sbjct: 309 VGFVVLLYMVKPRTLGDPSYLSWNRDTPDR 338
>Os05g0529900 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 325
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/322 (61%), Positives = 239/322 (74%), Gaps = 4/322 (1%)
Query: 28 KPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDRYDDAC 87
KPKYSKFTQQELPA KP+ TP VI F L+G+IF+PIGLVS+ AS++VVE+VD+YD C
Sbjct: 2 KPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGEC 61
Query: 88 VPANTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKSRSDAQL 147
V AN DK+ +IQ+ K C RT+ VPK M PI VYYQL+NFYQNHRRYVKSRSD QL
Sbjct: 62 VTAN--DKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQL 119
Query: 148 RDPKKANDTSTCDPEGTANGMA-IVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNISWKSD 206
R + ++ TCDPE + G A IVPCGLIAWS+FNDT+ F N K + V+KKNI+W SD
Sbjct: 120 RSKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSVNKKTVQVNKKNIAWSSD 179
Query: 207 REHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGRIHTDL 266
R KFG DVFP+NFQ G LIGG L+ LS+QEDLIVWMRTAALPTFRKLYGRI TD+
Sbjct: 180 RTIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDI 239
Query: 267 KKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXXXXXXXXXX 326
D ITV ++NNYNTYSF G K LVLST++W+GGKN+F+G AY+++G
Sbjct: 240 MASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVG 299
Query: 327 XXXIKPRKMGDNNYLSWNR-NP 347
+KPR +GD +YLSWN+ NP
Sbjct: 300 LNMVKPRTLGDPSYLSWNKENP 321
>Os09g0560600 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 351
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/290 (66%), Positives = 227/290 (78%), Gaps = 3/290 (1%)
Query: 28 KPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDRYDDAC 87
+PKY +FTQQEL ACKPIL P+ VI V V VG+IF+PIGL + AS KVVE+VDRYD C
Sbjct: 27 RPKYHRFTQQELQACKPILIPQTVILVLVFVGLIFIPIGLACIAASNKVVELVDRYDTKC 86
Query: 88 VPANTT-DKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKSRSDAQ 146
VP N +K+A+IQN +I K C R KVPKDM PI++YYQLD FYQNHRRYVKS +D Q
Sbjct: 87 VPRNMLRNKVAFIQNSSIDKTCTRVFKVPKDMKKPIYIYYQLDKFYQNHRRYVKSLNDMQ 146
Query: 147 LRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKN--LPVDKKNISWK 204
LR+PKK DT C PE TANG IVPCGLIAWS+FNDTY F R N L V+K ISWK
Sbjct: 147 LRNPKKVADTQYCSPEATANGRPIVPCGLIAWSLFNDTYSFTRGHGNETLRVNKDGISWK 206
Query: 205 SDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGRIHT 264
S+R +FG++V+PKNFQNG+LIGG L+P+K LS+QEDLIVWMR AALPTFRKLYGRI
Sbjct: 207 SERNRRFGKNVYPKNFQNGTLIGGGQLNPSKPLSEQEDLIVWMRIAALPTFRKLYGRIDM 266
Query: 265 DLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVG 314
DL+ GD + VT++NNYN+YSF+GKK LVLST+ WLGGKN FLG AY VG
Sbjct: 267 DLQAGDRVEVTMQNNYNSYSFNGKKSLVLSTAGWLGGKNAFLGRAYAIVG 316
>Os03g0785500 Protein of unknown function DUF284, transmembrane eukaryotic family
protein
Length = 351
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/321 (60%), Positives = 231/321 (71%), Gaps = 2/321 (0%)
Query: 26 TRKPKYSKFTQQELPACKPILTPKWVISVFVLVGVIFVPIGLVSLKASRKVVEIVDRYDD 85
R + +FTQQ LPA KP +TP VI++F+++GV FVP+GLV L AS V EI RYD
Sbjct: 27 ARSGVFYRFTQQNLPAWKPAMTPGCVITIFLMIGVTFVPVGLVCLHASNHVAEIAHRYDI 86
Query: 86 ACVP-ANTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQLDNFYQNHRRYVKSRSD 144
CVP A ++ AYI++ +ISKNC + +KV M API+VYY+LDNFYQNHRRYVKSRSD
Sbjct: 87 DCVPNAYKRNRQAYIKDSSISKNCTQEVKVKYLMRAPIYVYYELDNFYQNHRRYVKSRSD 146
Query: 145 AQLRDPKKANDTSTCDPEGTANGMAIVPCGLIAWSIFNDTYGFVRNSKNLPVDKKNISWK 204
QLR +K +S CDP +G+ IVPCGLIAWS+FNDTYGF S + V++KNISWK
Sbjct: 147 KQLRYGQKYTHSS-CDPIERNDGLPIVPCGLIAWSLFNDTYGFTCGSTEIKVNRKNISWK 205
Query: 205 SDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQEDLIVWMRTAALPTFRKLYGRIHT 264
SDREHKFG+DV+P NFQNGSLIGG LDP L++QEDLIVWMRTAALP FRKLYG I
Sbjct: 206 SDREHKFGKDVYPFNFQNGSLIGGGKLDPALPLNQQEDLIVWMRTAALPQFRKLYGVIEE 265
Query: 265 DLKKGDTITVTLENNYNTYSFSGKKKLVLSTSTWLGGKNDFLGLAYLSVGGXXXXXXXXX 324
DL+ + IT+ + NNYNTYSF GKK L+L+TSTWLGGKNDFLG AYL G
Sbjct: 266 DLQADEIITMHIANNYNTYSFGGKKSLILTTSTWLGGKNDFLGYAYLITGSLSLFLTILF 325
Query: 325 XXXXXIKPRKMGDNNYLSWNR 345
PR GD NYLSWNR
Sbjct: 326 ALIHVKNPRPHGDANYLSWNR 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,320,931
Number of extensions: 459242
Number of successful extensions: 726
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 6
Length of query: 350
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 248
Effective length of database: 11,709,973
Effective search space: 2904073304
Effective search space used: 2904073304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)