Os06g0665000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF284, transmembrane eukaryotic family protein.
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Os06g0665000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF284, transmembrane eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.64 | 0.247 | 10.7 | -0.838 | 0.424 | 0.787 | 0.364 | -1.71 | 0.156 | 1.35 | 17 | 1801 | -- | -- |
| 29.89 | 0.255 | 10.7 | -0.46 | 0.342 | 0.786 | 0.406 | -- | 0.264 | 1.07 | 14.9 | 2541 | -- | -- |
| 28.16 | 0.247 | 10.7 | -0.847 | 0.427 | 0.789 | -- | -1.71 | 0.157 | 1.46 | 17 | 1772 | -- | -- |
| 30.44 | 0.257 | 10.7 | -0.468 | 0.344 | 0.787 | -- | -- | 0.263 | 1.08 | 14.7 | 2552 | -- | -- |
| 34.84 | 0.275 | 10.7 | -0.732 | -- | 0.953 | -- | -1.33 | 0.179 | -- | 16.65 | 1091 | -- | -- |
| 41.81 | 0.303 | 10.6 | -0.147 | 0.428 | -- | 0.4 | -- | 0.426 | 0.93 | -- | -- | -- | -- |
| 42.46 | 0.305 | 10.7 | -0.162 | 0.428 | -- | -- | -- | 0.424 | 1.08 | -- | -- | -- | -- |
| 36.08 | 0.28 | 10.7 | -0.447 | -- | 1.03 | -- | -- | 0.256 | -- | 14.59 | 1049 | -- | -- |
| 34.85 | 0.275 | 10.7 | -- | 0.411 | 0.651 | -- | -- | 0.344 | 1.45 | 13.71 | 1869 | -- | -- |
| 53.83 | 0.343 | 10.6 | -0.146 | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
| 43.15 | 0.307 | 10.6 | -- | 0.425 | -- | -- | -- | 0.442 | 1.07 | -- | -- | -- | -- |
| 40.72 | 0.297 | 10.7 | -- | -- | 0.853 | -- | -- | 0.331 | -- | 13.86 | 1031 | -- | -- |
| 54.4 | 0.344 | 10.6 | -- | -- | -- | -- | -- | 0.448 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.18 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 2 | 26.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 11 |
| 9 | 26.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 13 | 26.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 11 |
| 95 | 26.44 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 96 | 26.44 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 99 | 26.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 119 | 26.48 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 120 | 26.48 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 131 | 26.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 135 | 26.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 152 | 26.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 7 |
| 174 | 26.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 204 | 26.56 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 382 | 26.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 428 | 26.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 589 | 27.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 596 | 27.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 604 | 27.21 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 662 | 27.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 663 | 27.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 727 | 27.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 876 | 27.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 916 | 27.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 951 | 27.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 959 | 27.72 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 988 | 27.75 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |