BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0665000 Os06g0665000|AK069711
(358 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12740.1 | chr3:4049739-4051561 FORWARD LENGTH=351 441 e-124
AT1G54320.1 | chr1:20275732-20277793 REVERSE LENGTH=350 441 e-124
AT1G79450.1 | chr1:29887831-29889904 FORWARD LENGTH=351 417 e-117
AT1G16360.1 | chr1:5593493-5595179 REVERSE LENGTH=337 414 e-116
AT5G46150.2 | chr5:18708735-18710424 REVERSE LENGTH=344 350 5e-97
>AT3G12740.1 | chr3:4049739-4051561 FORWARD LENGTH=351
Length = 350
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/330 (64%), Positives = 245/330 (74%), Gaps = 2/330 (0%)
Query: 29 RRNTKMPKYSKFTQQELPACKPILTPKWVVSXXXXXXXXXXXXXXXXXXAAQNVVEIVDR 88
RRN+K PKYSKFTQQELPACKPILTP WV+S A+Q+VVEIVDR
Sbjct: 23 RRNSKRPKYSKFTQQELPACKPILTPGWVISTFLIISVIFIPLGVISLFASQDVVEIVDR 82
Query: 89 YDDACVPANMTDNKLAYIQNPNISKECTRTLTITEDMNQPIFVYYQLDNFYQNHRRYVKS 148
YD AC+P + NK+AYIQ +K CTRTL + + M QPI+VYYQL+NFYQNHRRYVKS
Sbjct: 83 YDSACIPLSDRANKVAYIQGTG-NKSCTRTLIVPKRMKQPIYVYYQLENFYQNHRRYVKS 141
Query: 149 RNDGQLRDAAKANQTSACEPEKTTADGKPIVPCGLIAWSLFNDTYSFTRGNENLTVDKKD 208
R+D QLR NQ AC+PE G+PIVPCGLIAWSLFNDTY +R N+ LTV+KK
Sbjct: 142 RSDSQLRSVKDENQIDACKPEDDFG-GQPIVPCGLIAWSLFNDTYVLSRNNQGLTVNKKG 200
Query: 209 ISWKSDREHKFGKNVYPSNFQNGLLKGGGTLDPAIPLSEQEDLIVWMRTAALPTFRKLYG 268
I+WKSD+EHKFGKNV+P NFQ G L GG +LDP PLS+QEDLIVWMRTAALPTFRKLYG
Sbjct: 201 IAWKSDKEHKFGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPTFRKLYG 260
Query: 269 RIYVDLKKNDTITVKLSNNYNTYNFGGKKKLVLSTATWLGGKNDFLGFAYVIVGGVCXXX 328
+I DL+K + I V L NNYNTY+F GKKKLVLST +WLGGKNDFLG AY+ VGG+C
Sbjct: 261 KIESDLEKGENIQVTLQNNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFVL 320
Query: 329 XXXXXXXXXIKPRKLGDHNYLSWNRHPGGR 358
+KPR+LGD YLSWNR PGGR
Sbjct: 321 ALAFTVMYLVKPRRLGDPTYLSWNRIPGGR 350
>AT1G54320.1 | chr1:20275732-20277793 REVERSE LENGTH=350
Length = 349
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/330 (64%), Positives = 246/330 (74%), Gaps = 2/330 (0%)
Query: 29 RRNTKMPKYSKFTQQELPACKPILTPKWVVSXXXXXXXXXXXXXXXXXXAAQNVVEIVDR 88
R+N+K PKYSKFTQQELPACKPILTP WV+S A+Q+VVEIVDR
Sbjct: 22 RKNSKRPKYSKFTQQELPACKPILTPGWVISTFLIVSVIFIPLGVISLFASQDVVEIVDR 81
Query: 89 YDDACVPANMTDNKLAYIQNPNISKECTRTLTITEDMNQPIFVYYQLDNFYQNHRRYVKS 148
YD C+PA NK+AYIQ K C R L +T+ M QPI+VYYQL+NFYQNHRRYVKS
Sbjct: 82 YDTECIPAPARTNKVAYIQGDG-DKVCNRDLKVTKRMKQPIYVYYQLENFYQNHRRYVKS 140
Query: 149 RNDGQLRDAAKANQTSACEPEKTTADGKPIVPCGLIAWSLFNDTYSFTRGNENLTVDKKD 208
R+D QLR NQ SAC+PE G+PIVPCGLIAWSLFNDTY+ +R N +L V+KK
Sbjct: 141 RSDSQLRSTKYENQISACKPEDDVG-GQPIVPCGLIAWSLFNDTYALSRNNVSLAVNKKG 199
Query: 209 ISWKSDREHKFGKNVYPSNFQNGLLKGGGTLDPAIPLSEQEDLIVWMRTAALPTFRKLYG 268
I+WKSD+EHKFG V+P NFQ G + GG TLDP IPLSEQEDLIVWMRTAALPTFRKLYG
Sbjct: 200 IAWKSDKEHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPTFRKLYG 259
Query: 269 RIYVDLKKNDTITVKLSNNYNTYNFGGKKKLVLSTATWLGGKNDFLGFAYVIVGGVCXXX 328
+I DL+ DTI VKL+NNYNTY+F GKKKLVLST +WLGGKNDFLG AY+ VGG+C
Sbjct: 260 KIESDLEMGDTIHVKLNNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFIL 319
Query: 329 XXXXXXXXXIKPRKLGDHNYLSWNRHPGGR 358
+KPR+LGD +YLSWNR+PGGR
Sbjct: 320 ALAFTIMYLVKPRRLGDPSYLSWNRNPGGR 349
>AT1G79450.1 | chr1:29887831-29889904 FORWARD LENGTH=351
Length = 350
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/329 (60%), Positives = 238/329 (72%), Gaps = 2/329 (0%)
Query: 29 RRNTKMPKYSKFTQQELPACKPILTPKWVVSXXXXXXXXXXXXXXXXXXAAQNVVEIVDR 88
++ +K PKYS+FTQQELPACKPILTP+WV+ A+Q VVEIVDR
Sbjct: 22 KKTSKRPKYSRFTQQELPACKPILTPRWVILTFLVAGVVFIPLGVICLFASQGVVEIVDR 81
Query: 89 YDDACVPANMTDNKLAYIQNPNISKECTRTLTITEDMNQPIFVYYQLDNFYQNHRRYVKS 148
YD C+P + +N +AYIQ K C RT+T+T+ M P++VYYQL+NFYQNHRRYVKS
Sbjct: 82 YDTDCIPTSSRNNMVAYIQGEG-DKICKRTITVTKAMKHPVYVYYQLENFYQNHRRYVKS 140
Query: 149 RNDGQLRDAAKANQTSACEPEKTTADGKPIVPCGLIAWSLFNDTYSFTRGNENLTVDKKD 208
RND QLR + + C PE G+PIVPCGL+AWSLFNDTYSF+R ++ L V+KK
Sbjct: 141 RNDAQLRSPKEEHDVKTCAPEDNVG-GEPIVPCGLVAWSLFNDTYSFSRNSQQLLVNKKG 199
Query: 209 ISWKSDREHKFGKNVYPSNFQNGLLKGGGTLDPAIPLSEQEDLIVWMRTAALPTFRKLYG 268
ISWKSDRE+KFGKNV+P NFQ G GGGTL+ + PLSEQEDLIVWMRTAALPTFRKLYG
Sbjct: 200 ISWKSDRENKFGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPTFRKLYG 259
Query: 269 RIYVDLKKNDTITVKLSNNYNTYNFGGKKKLVLSTATWLGGKNDFLGFAYVIVGGVCXXX 328
+I DL DTITV L NNYNTY+F G+KKLVLST +WLGG+NDFLG AY+ VG +C
Sbjct: 260 KIETDLHAGDTITVLLQNNYNTYSFNGQKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFL 319
Query: 329 XXXXXXXXXIKPRKLGDHNYLSWNRHPGG 357
+KPR+LGD +YLSWNR GG
Sbjct: 320 AVTFAVLYLVKPRQLGDPSYLSWNRSAGG 348
>AT1G16360.1 | chr1:5593493-5595179 REVERSE LENGTH=337
Length = 336
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/320 (62%), Positives = 232/320 (72%), Gaps = 2/320 (0%)
Query: 38 SKFTQQELPACKPILTPKWVVSXXXXXXXXXXXXXXXXXXAAQNVVEIVDRYDDACVPAN 97
S+FTQQELPACKPILTPKWV+ A+Q V+EIVDRYD C+P +
Sbjct: 17 SRFTQQELPACKPILTPKWVILTFLVSGVVFIPLGVICLFASQGVIEIVDRYDTDCIPLS 76
Query: 98 MTDNKLAYIQNPNISKECTRTLTITEDMNQPIFVYYQLDNFYQNHRRYVKSRNDGQLRDA 157
DNK+ YIQ K C RT+T+T+ M P++VYYQL+N+YQNHRRYVKSR DGQLR
Sbjct: 77 SRDNKVRYIQGLE-DKRCNRTITVTKTMKNPVYVYYQLENYYQNHRRYVKSRQDGQLRSP 135
Query: 158 AKANQTSACEPEKTTADGKPIVPCGLIAWSLFNDTYSFTRGNENLTVDKKDISWKSDREH 217
++T +C PE T G+PIVPCGL+AWSLFNDTY FTR N+ L V+KKDISWKSDRE
Sbjct: 136 KDEHETKSCAPEDTLG-GQPIVPCGLVAWSLFNDTYDFTRNNQKLPVNKKDISWKSDRES 194
Query: 218 KFGKNVYPSNFQNGLLKGGGTLDPAIPLSEQEDLIVWMRTAALPTFRKLYGRIYVDLKKN 277
KFGKNV+P NFQ G L GG +LD IPLSEQEDLIVWMRTAALPTFRKLYG+I DL+
Sbjct: 195 KFGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAG 254
Query: 278 DTITVKLSNNYNTYNFGGKKKLVLSTATWLGGKNDFLGFAYVIVGGVCXXXXXXXXXXXX 337
DTI V L NNYNTY+F GKKKLVLST +WLGG+NDFLG AY+ VG +C
Sbjct: 255 DTIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVSFSVLYL 314
Query: 338 IKPRKLGDHNYLSWNRHPGG 357
KPR+LGD +YLSWNR GG
Sbjct: 315 AKPRQLGDPSYLSWNRSAGG 334
>AT5G46150.2 | chr5:18708735-18710424 REVERSE LENGTH=344
Length = 343
Score = 350 bits (899), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 170/315 (53%), Positives = 215/315 (68%), Gaps = 4/315 (1%)
Query: 39 KFTQQELPACKPILTPKWVVSXXXXXXXXXXXXXXXXXXAAQNVVEIVDRYDDACVPANM 98
+F QQ+LPACKP+LTP V++ A+++ +EI+DRYD C+P
Sbjct: 28 QFKQQKLPACKPVLTPISVITVFMLMGFVFIPIGLITLRASRDAIEIIDRYDVECIPEEY 87
Query: 99 TDNKLAYIQNPNISKECTRTLTITEDMNQPIFVYYQLDNFYQNHRRYVKSRNDGQLRDAA 158
NKL YI + +I K CTR L + + M PIF+YYQLDN+YQNHRRYVKSR+D QL
Sbjct: 88 RTNKLLYITDSSIPKNCTRYLKVQKYMKAPIFIYYQLDNYYQNHRRYVKSRSDQQLLHGL 147
Query: 159 KANQTSACEPEKTTADGKPIVPCGLIAWSLFNDTYSFTRGNENLTVDKKDISWKSDREHK 218
+ + TS+CEPE+++ +G PIVPCGLIAWS+FNDT++F+R L V + +I+WKSDREHK
Sbjct: 148 EYSHTSSCEPEESS-NGLPIVPCGLIAWSMFNDTFTFSRERTKLNVSRNNIAWKSDREHK 206
Query: 219 FGKNVYPSNFQNGLLKGGGTLDPAIPLSEQEDLIVWMRTAALPTFRKLYGRIYVDLKKND 278
FGKNVYP NFQNG L GG LDP IPLS+QED IVWMR AAL +FRKLYGRI DL+
Sbjct: 207 FGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRIEEDLEPGK 266
Query: 279 TITVKLSNNYNTYNFGGKKKLVLSTATWLGGKNDFLGFAYVIVGGVCXXXXXXXXXXXXI 338
+ V L NNYNTY+F G+KKL+LST+ WLGG+NDFLG Y++VG
Sbjct: 267 VVEVNLMNNYNTYSFSGQKKLILSTSNWLGGRNDFLGITYLVVGSSSIVISIIFMLLHLK 326
Query: 339 KPRKLGDHNYLSWNR 353
PR GD+ SWN+
Sbjct: 327 NPRPYGDN---SWNK 338
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,479,893
Number of extensions: 307747
Number of successful extensions: 564
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 5
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)