Os09g0560600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF284, transmembrane eukaryotic family protein.
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Os09g0560600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF284, transmembrane eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.62 | 0.592 | 8.6 | -3.06 | 0.977 | 1.28 | 1 | -3.74 | -0.928 | 21.6 | 25.58 | 1293 | -- | -- |
| 163.89 | 0.596 | 8.5 | -2.13 | 0.97 | 0.956 | 0.895 | -- | -0.823 | 21.5 | 22.6 | 1243 | -- | -- |
| 160.85 | 0.591 | 8.58 | -3.16 | 0.975 | 1.35 | -- | -4.64 | -0.771 | 21.4 | 27.4 | 1283 | -- | -- |
| 164.86 | 0.598 | 8.47 | -2.12 | 0.969 | 0.89 | -- | -- | -0.631 | 21.4 | 27.14 | 1230 | -- | -- |
| 197.4 | 0.654 | 8.53 | -2.92 | -- | 1.82 | -- | -3.7 | -0.944 | -- | 24.65 | 904 | -- | -- |
| 194.42 | 0.654 | 8.46 | -1.8 | 1.06 | -- | 1.07 | -- | -0.618 | 22 | -- | -- | -- | -- |
| 198.69 | 0.66 | 8.46 | -1.83 | 1.06 | -- | -- | -- | -0.619 | 21.8 | -- | -- | -- | -- |
| 198.11 | 0.656 | 8.5 | -2.28 | -- | 1.61 | -- | -- | -0.917 | -- | 20.16 | 800 | -- | -- |
| 269.76 | 0.765 | 8.4 | -- | 0.997 | 0.623 | -- | -- | -0.325 | 21.5 | 33.8 | 967 | -- | -- |
| 265.36 | 0.761 | 8.43 | -1.82 | -- | -- | -- | -- | -0.62 | -- | -- | -- | -- | -- |
| 287.37 | 0.793 | 8.42 | -- | 1.05 | -- | -- | -- | -0.415 | 21.7 | -- | -- | -- | -- |
| 319.42 | 0.832 | 8.4 | -- | -- | 1.06 | -- | -- | -0.48 | -- | 24.77 | 823 | -- | -- |
| 353.07 | 0.877 | 8.39 | -- | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 55 | 155.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 86 | 157.33 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 18 |
| 88 | 157.43 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 115 | 157.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 16 |
| 116 | 157.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 119 | 158.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 151 | 158.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 172 | 159.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 187 | 159.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 198 | 159.24 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 218 | 159.35 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 263 | 159.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 313 | 159.77 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 20 |
| 352 | 159.88 | radiation | 30 | 1440 | < th | dose independent | rect. | 19 | 13 |
| 411 | 160.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 412 | 160.03 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 418 | 160.04 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 519 | 160.60 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 557 | 160.98 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 559 | 160.99 | temperature | 10 | 90 | > th | dose dependent | rect. | 15 | 14 |
| 565 | 161.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 575 | 161.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 578 | 161.15 | radiation | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 585 | 161.18 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 588 | 161.22 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 597 | 161.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 598 | 161.30 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 629 | 161.41 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 690 | 161.64 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 821 | 162.10 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 826 | 162.12 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 855 | 162.20 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 862 | 162.21 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 897 | 162.24 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 935 | 162.27 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 21 |
| 976 | 162.43 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 984 | 162.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 8 |