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Os03g0120100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF284, transmembrane eukaryotic family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.76 (0.0224) R2 : 0.783
β1 : -3.09 (0.084) R2dD : 0.735 R2D : 0.358
β2 : 1.15 (0.0622) R2dC : 0.197 R2C : -0.0387
β3 : -1.51 (0.102) R2dE : 0.152 R2E : -0.303
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.12 (0.052) R2dN8 : 0.367 R2N8 : -0.0443
σ : 0.41
deviance : 77.55
__
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C
peak time of C : 4.59
E
wheather : temperature
threshold : 27.52
memory length : 20
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.04 0.404 9.73 -2.86 1.1 -1.58 1.05 -1.42 -1.07 4.6 26.37 15 -- --
77.28 0.413 9.75 -3.07 1.07 -1.46 0.605 -- -1.11 4.69 26.37 15 -- --
76.54 0.411 9.74 -2.92 1.09 -1.52 -- -0.973 -1.08 4.61 26.34 20 -- --
77.55 0.41 9.76 -3.09 1.15 -1.51 -- -- -1.12 4.59 27.52 20 -- --
124.04 0.522 9.72 -2.85 -- -1.21 -- -0.871 -0.935 -- 24.1 15 -- --
109.2 0.49 9.68 -2.74 0.828 -- 0.681 -- -0.792 5.91 -- -- -- --
110.33 0.492 9.68 -2.73 0.832 -- -- -- -0.795 5.86 -- -- -- --
125.27 0.524 9.74 -2.96 -- -1.14 -- -- -0.959 -- 24.1 2 -- --
306.09 0.819 9.63 -- 0.836 -0.284 -- -- -0.545 5.68 27.52 20 -- --
146.22 0.565 9.7 -2.71 -- -- -- -- -0.776 -- -- -- -- --
307.38 0.82 9.61 -- 0.791 -- -- -- -0.491 6.02 -- -- -- --
336.81 0.855 9.62 -- -- 0.803 -- -- -0.459 -- 18.6 4 -- --
339.81 0.86 9.63 -- -- -- -- -- -0.475 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.61 precipitation 0.1 43200 > th dose dependent rect. 20 4
3 70.12 precipitation 0.1 43200 > th dose independent rect. 20 2
4 70.13 precipitation 0.1 43200 < th dose independent rect. 20 2
5 70.13 precipitation 0.1 43200 < th dose dependent rect. 20 2
6 70.16 radiation 40.0 14400 > th dose dependent rect. 12 1
12 70.80 precipitation 0.1 43200 > th dose dependent rect. 17 7
14 70.85 wind 1.0 14400 > th dose independent rect. 10 3
20 71.00 radiation 10.0 14400 < th dose independent rect. 6 1
21 71.01 wind 1.0 14400 < th dose dependent rect. 10 2
23 71.10 humidity 80.0 43200 < th dose independent rect. 17 3
24 71.21 wind 1.0 14400 < th dose independent rect. 10 3
25 71.23 radiation 1.0 14400 > th dose independent rect. 16 1
27 71.32 precipitation 0.1 43200 > th dose dependent rect. 21 1
28 71.33 precipitation 0.1 43200 > th dose independent rect. 17 6
30 71.35 precipitation 0.1 43200 < th dose independent rect. 17 6
31 71.35 precipitation 0.1 43200 < th dose dependent rect. 17 6
32 71.36 radiation 1.0 14400 < th dose independent rect. 16 1
37 71.43 humidity 80.0 43200 > th dose independent rect. 17 4
44 71.51 radiation 1.0 14400 < th dose independent rect. 15 3
46 71.56 radiation 10.0 14400 > th dose independent rect. 17 14
57 71.82 precipitation 0.1 43200 < th dose independent rect. 17 1
58 71.82 precipitation 0.1 43200 < th dose dependent rect. 17 1
66 71.88 precipitation 0.1 43200 > th dose independent rect. 17 1
71 71.92 radiation 10.0 14400 < th dose independent rect. 2 5
77 71.95 humidity 80.0 43200 < th dose independent rect. 18 1
86 72.00 radiation 10.0 14400 > th dose independent rect. 5 2
101 72.10 precipitation 0.1 43200 > th dose dependent rect. 17 1
116 72.23 precipitation 0.1 43200 > th dose dependent rect. 12 11
118 72.27 radiation 40.0 14400 > th dose dependent rect. 7 7
146 72.34 radiation 40.0 14400 > th dose dependent rect. 12 20
177 72.45 radiation 10.0 14400 < th dose independent rect. 15 16
178 72.45 radiation 1.0 14400 > th dose dependent rect. 5 2
179 72.46 radiation 40.0 14400 < th dose independent rect. 12 1
198 72.54 precipitation 0.1 43200 > th dose dependent sin 17 NA
291 72.75 radiation 1.0 14400 > th dose independent rect. 15 3
292 72.75 precipitation 0.1 43200 > th dose dependent rect. 12 6
297 72.80 precipitation 0.1 43200 > th dose dependent rect. 14 5
310 72.88 radiation 40.0 14400 > th dose independent rect. 12 1
314 72.89 humidity 70.0 43200 > th dose dependent rect. 18 1
321 72.91 humidity 80.0 43200 < th dose independent rect. 16 5
322 72.91 radiation 40.0 14400 > th dose dependent sin 21 NA
337 72.96 radiation 40.0 14400 < th dose dependent rect. 6 1
338 72.96 radiation 40.0 14400 < th dose dependent rect. 3 4
360 72.98 radiation 10.0 14400 < th dose independent sin 12 NA
391 73.01 radiation 40.0 14400 > th dose dependent no NA NA
554 73.06 radiation 40.0 14400 < th dose dependent rect. 20 11
558 73.07 radiation 30.0 14400 < th dose dependent rect. 22 9
577 73.10 atmosphere 995.0 43200 > th dose independent rect. 17 1
581 73.12 temperature 10.0 4320 > th dose dependent rect. 23 1
582 73.12 temperature 30.0 4320 < th dose dependent rect. 23 1
611 73.19 atmosphere 995.0 43200 < th dose independent rect. 17 1
615 73.19 radiation 40.0 14400 < th dose independent rect. 12 20
616 73.19 atmosphere 995.0 43200 < th dose dependent rect. 17 1
620 73.22 radiation 10.0 14400 < th dose independent rect. 12 19
636 73.26 radiation 10.0 14400 < th dose dependent rect. 15 1
637 73.26 humidity 80.0 43200 > th dose dependent rect. 20 2
692 73.37 radiation 30.0 14400 < th dose independent sin 9 NA
717 73.46 radiation 10.0 14400 < th dose independent rect. 15 22
723 73.48 radiation 40.0 14400 < th dose independent rect. 12 4
730 73.49 radiation 40.0 14400 < th dose independent rect. 12 6
737 73.49 radiation 40.0 14400 < th dose independent rect. 12 17
767 73.51 radiation 10.0 14400 < th dose independent rect. 15 20
771 73.52 radiation 10.0 14400 < th dose independent rect. 9 22
773 73.53 radiation 30.0 14400 < th dose independent rect. 6 8
854 73.62 radiation 40.0 14400 < th dose independent rect. 12 23
885 73.68 radiation 20.0 14400 < th dose independent rect. 14 2
907 73.72 radiation 40.0 14400 < th dose independent rect. 10 23
908 73.72 radiation 10.0 14400 < th dose independent rect. 12 23
957 73.78 precipitation 0.1 43200 < th dose independent rect. 12 11
961 73.78 precipitation 0.1 43200 < th dose dependent rect. 12 11