BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0517600 Os05g0517600|Os05g0517600
(145 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0517600 Similar to Non-symbiotic hemoglobin 1 (rHb1) (... 276 4e-75
Os03g0233900 Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a) 181 1e-46
Os03g0226200 Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b) 179 7e-46
Os03g0234000 Non-symbiotic hemoglobin 3 (rHb3) (ORYsa GLB1c) 174 2e-44
Os03g0234100 Similar to Non-symbiotic hemoglobin 4 (rHb4) (... 166 6e-42
>Os05g0517600 Similar to Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a)
Length = 145
Score = 276 bits (705), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MGFSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHP 60
MGFSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHP
Sbjct: 1 MGFSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHP 60
Query: 61 KACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDTIKDAVPEMWSP 120
KACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDTIKDAVPEMWSP
Sbjct: 61 KACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDTIKDAVPEMWSP 120
Query: 121 EMKGAWEEAYDQL 133
EMKGAWEEAYDQL
Sbjct: 121 EMKGAWEEAYDQL 133
>Os03g0233900 Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a)
Length = 166
Score = 181 bits (460), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/145 (63%), Positives = 109/145 (75%), Gaps = 14/145 (9%)
Query: 1 MGFSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHP 60
+ FSE QE LVL+SW +KKDS +IAL+FFL+IFE+AP+A QMFSFLR+S DVPLE +P
Sbjct: 12 VSFSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRNS--DVPLEKNP 69
Query: 61 K-----------ACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDT 109
K CE+A QLRK G V VR+ TL+RLGATH+K GV DA+FEVVK ALLDT
Sbjct: 70 KLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDT 129
Query: 110 IKDAVP-EMWSPEMKGAWEEAYDQL 133
IK+ VP +MWSP MK AW EAYD L
Sbjct: 130 IKEEVPADMWSPAMKSAWSEAYDHL 154
>Os03g0226200 Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b)
Length = 169
Score = 179 bits (454), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 108/145 (74%), Gaps = 14/145 (9%)
Query: 1 MGFSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHP 60
+ FSE QE LVL+SW MKKDS +I L+FFL+IFE+AP+A QMFSFLR+S DVPLE +P
Sbjct: 15 VSFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSFLRNS--DVPLEKNP 72
Query: 61 K-----------ACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDT 109
K CE+A QLRK G V VR+ TL+RLGATH K GV DA+FEV + ALL+T
Sbjct: 73 KLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALLET 132
Query: 110 IKDAVP-EMWSPEMKGAWEEAYDQL 133
IK+AVP +MWSP MK AW EAY+QL
Sbjct: 133 IKEAVPVDMWSPAMKSAWSEAYNQL 157
>Os03g0234000 Non-symbiotic hemoglobin 3 (rHb3) (ORYsa GLB1c)
Length = 169
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 106/143 (74%), Gaps = 14/143 (9%)
Query: 3 FSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHPK- 61
F+E QE LVL+SW MK DS I +FFL+IFE+AP+A+Q+FSFLR+S DVPLE +PK
Sbjct: 16 FTEEQEALVLKSWAIMKNDSAHIGHRFFLKIFEVAPSARQLFSFLRNS--DVPLEKNPKL 73
Query: 62 ----------ACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDTIK 111
CE+A QLRKTG V VR+ T++RLG+TH K GV+DA+FEV K ALL+TIK
Sbjct: 74 KIHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDAHFEVAKFALLETIK 133
Query: 112 DAVP-EMWSPEMKGAWEEAYDQL 133
+AVP MWSP MKGAW EAYD L
Sbjct: 134 EAVPASMWSPAMKGAWGEAYDHL 156
>Os03g0234100 Similar to Non-symbiotic hemoglobin 4 (rHb4) (ORYsa GLB1d)
Length = 167
Score = 166 bits (420), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 103/143 (72%), Gaps = 14/143 (9%)
Query: 3 FSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHPK- 61
F+E QE LVL+SW MK DS +I +FFL+IFE+AP+A+ +FSFLR+S DVPLE +P
Sbjct: 13 FTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNS--DVPLEKNPNL 70
Query: 62 ----------ACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDTIK 111
CE+A QLRKTG V VR+ T++RLG+TH K GV+D +FEV + ALL+TIK
Sbjct: 71 KKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALLETIK 130
Query: 112 DAVP-EMWSPEMKGAWEEAYDQL 133
D +P MWSPEMK AW EAY+ L
Sbjct: 131 DGIPASMWSPEMKNAWGEAYEHL 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,298,579
Number of extensions: 144018
Number of successful extensions: 322
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 5
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)