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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0234100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Non-symbiotic hemoglobin 4 (rHb4) (ORYsa GLB1d).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0249) R2 : 0.000916
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.034 (0.0525) R2dN8 : 0.00118 R2N8 : 0.000916
σ : 0.47
deviance : 101.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.37 0.456 3.31 0.091 0.256 -0.0123 -0.458 -1.34 0.0432 4.95 70.36 5842 -- --
96.05 0.456 3.32 0.0813 0.269 -0.193 -0.328 -- -0.0254 4.62 85 7307 -- --
94.73 0.453 3.31 0.107 0.248 0.0242 -- -1.36 0.0568 4.96 71.69 6297 -- --
96.42 0.457 3.32 0.0551 0.283 -0.236 -- -- -0.0684 5.08 85.69 7524 -- --
97.78 0.461 3.31 0.119 -- 0.117 -- -1.47 0.0802 -- 71.11 6325 -- --
97.08 0.462 3.3 0.00886 0.262 -- -0.478 -- 0.0271 4.83 -- -- -- --
97.67 0.463 3.3 0.0108 0.26 -- -- -- 0.0295 4.96 -- -- -- --
99.87 0.465 3.33 0.0565 -- -0.266 -- -- -0.0744 -- 86 6967 -- --
96.46 0.457 3.33 -- 0.266 -0.241 -- -- -0.0791 4.92 85.77 7308 -- --
101.22 0.47 3.3 0.0203 -- -- -- -- 0.0362 -- -- -- -- --
97.67 0.462 3.3 -- 0.26 -- -- -- 0.0283 4.96 -- -- -- --
99.98 0.466 3.33 -- -- -0.253 -- -- -0.0794 -- 85.56 6967 -- --
101.23 0.47 3.3 -- -- -- -- -- 0.034 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.44 wind 9.0 14400 > th dose independent rect. 1 1
3 88.44 wind 9.0 14400 > th dose dependent rect. 1 1
5 88.67 atmosphere 1000.0 30 > th dose independent rect. 3 23
6 88.74 atmosphere 1005.0 90 > th dose dependent rect. 2 1
8 89.28 radiation 1.0 43200 < th dose dependent rect. 3 1
10 89.39 atmosphere 1005.0 10 > th dose dependent rect. 2 2
11 89.49 temperature 25.0 90 > th dose independent rect. 1 2
13 89.56 temperature 25.0 90 > th dose dependent rect. 1 2
31 89.75 wind 9.0 1440 < th dose independent rect. 3 1
32 89.75 temperature 10.0 1440 > th dose independent rect. 3 1
35 89.75 temperature 30.0 1440 < th dose independent rect. 3 1
39 89.75 humidity 50.0 1440 > th dose independent rect. 3 1
48 89.75 atmosphere 995.0 1440 > th dose independent rect. 3 1
49 89.75 radiation 1.0 1440 < th dose independent rect. 3 1
69 89.75 temperature 10.0 1440 > th dose independent rect. 4 23
79 89.76 wind 3.0 30 < th dose independent rect. 2 1
80 89.76 wind 3.0 30 < th dose dependent rect. 2 1
82 89.77 atmosphere 1005.0 30 > th dose independent rect. 2 1
96 89.84 temperature 10.0 30 > th dose independent rect. 2 1
98 89.84 temperature 30.0 30 < th dose independent rect. 2 1
99 89.84 humidity 50.0 30 > th dose independent rect. 2 1
103 89.84 atmosphere 995.0 30 > th dose independent rect. 2 1
104 89.84 atmosphere 1010.0 30 < th dose independent rect. 2 1
106 89.84 radiation 1.0 30 < th dose independent rect. 2 1
111 89.84 precipitation 0.1 30 < th dose independent rect. 2 1
112 89.84 temperature 10.0 30 > th dose independent rect. 3 23
113 89.84 humidity 50.0 30 > th dose dependent rect. 2 1
117 89.84 radiation 1.0 30 < th dose dependent rect. 2 1
122 89.84 precipitation 0.1 30 < th dose dependent rect. 2 1
128 89.91 atmosphere 1015.0 30 < th dose dependent rect. 2 1
129 89.99 temperature 30.0 30 < th dose dependent rect. 2 1
131 90.02 wind 1.0 30 > th dose independent rect. 2 1
135 90.06 precipitation 0.1 30 < th dose independent rect. 3 23
137 90.06 precipitation 0.1 30 < th dose dependent rect. 3 23
183 90.49 wind 9.0 30 < th dose independent rect. 3 23
193 90.94 humidity 50.0 30 > th dose independent rect. 3 23
214 91.77 humidity 90.0 90 < th dose independent rect. 2 1
244 92.15 radiation 10.0 1440 < th dose dependent rect. 11 1
247 92.27 radiation 10.0 30 < th dose dependent rect. 3 23
248 92.31 wind 7.0 14400 > th dose independent rect. 9 1
249 92.33 wind 7.0 14400 > th dose dependent rect. 9 1
251 92.40 wind 7.0 14400 < th dose independent rect. 9 1
256 92.58 humidity 80.0 14400 > th dose independent rect. 8 1
259 92.65 atmosphere 1000.0 10 > th dose independent rect. 21 23
261 92.68 humidity 80.0 14400 < th dose dependent rect. 2 7
274 92.85 radiation 10.0 30 > th dose independent rect. 7 1
278 92.93 humidity 80.0 10 < th dose independent rect. 6 2
281 92.95 wind 1.0 4320 < th dose dependent rect. 17 1
287 93.05 atmosphere 995.0 720 > th dose independent rect. 7 8
288 93.05 radiation 10.0 30 < th dose independent rect. 3 23
289 93.05 humidity 50.0 30 > th dose dependent rect. 3 23
296 93.12 wind 9.0 720 < th dose independent rect. 19 8
297 93.12 precipitation 0.1 720 < th dose independent rect. 19 8
299 93.12 precipitation 0.1 720 < th dose dependent rect. 19 8
300 93.13 temperature 30.0 30 < th dose independent rect. 3 23
302 93.15 humidity 80.0 14400 < th dose independent rect. 7 3
304 93.16 wind 1.0 4320 < th dose independent rect. 17 1
306 93.16 humidity 90.0 90 < th dose independent rect. 1 7
314 93.22 atmosphere 1000.0 720 > th dose independent rect. 3 8
332 93.30 wind 9.0 720 < th dose independent rect. 15 16
336 93.31 humidity 80.0 10 < th dose independent rect. 23 9
339 93.32 precipitation 0.1 720 < th dose independent rect. 15 16
341 93.32 precipitation 0.1 720 < th dose dependent rect. 15 16
360 93.43 temperature 10.0 720 > th dose independent rect. 7 8
361 93.43 atmosphere 1015.0 720 < th dose independent rect. 7 8
362 93.43 temperature 10.0 720 > th dose independent rect. 15 16
364 93.44 temperature 10.0 720 > th dose independent rect. 19 8
365 93.44 temperature 30.0 720 < th dose independent rect. 19 8
366 93.44 humidity 50.0 720 > th dose independent rect. 19 8
367 93.44 atmosphere 995.0 720 > th dose independent rect. 19 8
368 93.44 radiation 1.0 720 < th dose independent rect. 19 8
373 93.44 temperature 10.0 720 > th dose independent rect. 3 16
374 93.44 radiation 10.0 10 > th dose independent rect. 16 16
375 93.44 radiation 1.0 720 < th dose dependent rect. 19 8
385 93.50 wind 1.0 14400 < th dose dependent rect. 2 1
386 93.51 atmosphere 995.0 720 > th dose independent rect. 3 16
387 93.51 humidity 90.0 10 < th dose dependent rect. 20 1
389 93.52 atmosphere 1000.0 10 < th dose independent rect. 10 2
391 93.53 humidity 60.0 43200 < th dose independent rect. 11 1
394 93.54 radiation 1.0 1440 < th dose dependent rect. 21 1
400 93.57 humidity 70.0 14400 > th dose independent rect. 4 5
420 93.61 atmosphere 1000.0 90 < th dose independent rect. 10 1
432 93.64 humidity 90.0 90 < th dose independent rect. 19 13
436 93.65 atmosphere 1000.0 10 < th dose dependent rect. 10 2
438 93.66 wind 7.0 14400 < th dose dependent rect. 10 2
450 93.68 humidity 90.0 10 < th dose independent rect. 20 1
451 93.68 atmosphere 1005.0 10 > th dose independent rect. 20 1
462 93.71 atmosphere 995.0 720 > th dose independent rect. 15 16
464 93.71 wind 1.0 14400 > th dose dependent rect. 10 2
469 93.74 humidity 70.0 720 > th dose independent rect. 19 8
473 93.75 atmosphere 1000.0 90 < th dose dependent rect. 10 1
477 93.76 temperature 30.0 30 < th dose dependent rect. 20 1
480 93.77 temperature 20.0 10 > th dose independent rect. 20 1
481 93.77 precipitation 0.1 720 < th dose independent rect. 7 8
482 93.77 precipitation 0.1 720 < th dose dependent rect. 7 8
484 93.78 wind 5.0 10 < th dose independent rect. 20 1
492 93.80 wind 1.0 10 < th dose independent rect. 11 16
494 93.80 wind 9.0 10 < th dose dependent rect. 20 1
495 93.80 wind 5.0 30 < th dose dependent rect. 20 1
496 93.80 atmosphere 995.0 10 > th dose dependent rect. 20 1
502 93.81 wind 1.0 10 > th dose independent rect. 20 1
503 93.81 wind 9.0 10 < th dose independent rect. 20 1
505 93.81 temperature 10.0 10 > th dose independent rect. 20 1
508 93.81 temperature 30.0 10 < th dose independent rect. 20 1
509 93.81 humidity 50.0 10 > th dose independent rect. 20 1
512 93.81 atmosphere 995.0 10 > th dose independent rect. 20 1
515 93.81 atmosphere 1010.0 10 < th dose independent rect. 20 1
517 93.81 radiation 1.0 10 < th dose independent rect. 20 1
522 93.81 precipitation 0.1 10 < th dose independent rect. 20 1
523 93.81 radiation 40.0 720 < th dose independent rect. 15 16
524 93.81 temperature 10.0 10 > th dose independent rect. 21 23
528 93.81 atmosphere 1015.0 30 < th dose dependent rect. 20 1
529 93.81 radiation 1.0 10 < th dose dependent rect. 20 1
535 93.81 precipitation 0.1 10 < th dose dependent rect. 20 1
561 93.82 humidity 50.0 14400 > th dose dependent rect. 8 1
563 93.82 atmosphere 1000.0 10 < th dose dependent rect. 12 1
574 93.83 temperature 10.0 10 > th dose dependent rect. 20 1
585 93.84 wind 1.0 30 > th dose dependent rect. 20 1
590 93.84 temperature 25.0 30 > th dose dependent rect. 20 2
597 93.85 humidity 70.0 14400 > th dose dependent rect. 8 1
598 93.85 humidity 50.0 30 > th dose dependent rect. 20 1
602 93.86 temperature 10.0 1440 > th dose independent rect. 21 1
605 93.86 temperature 30.0 1440 < th dose independent rect. 21 1
609 93.86 humidity 50.0 1440 > th dose independent rect. 21 1
615 93.86 atmosphere 995.0 1440 > th dose independent rect. 21 1
616 93.86 radiation 1.0 1440 < th dose independent rect. 21 1
637 93.86 temperature 10.0 1440 > th dose independent rect. 22 23
653 93.87 radiation 1.0 43200 < th dose dependent rect. 21 1
654 93.87 wind 1.0 10 < th dose dependent rect. 12 2
656 93.88 wind 1.0 4320 > th dose independent rect. 17 1
691 93.92 wind 1.0 10 > th dose independent rect. 21 23
712 93.93 wind 1.0 4320 < th dose dependent rect. 17 4
716 93.94 atmosphere 1015.0 720 < th dose independent rect. 3 16
721 93.95 wind 5.0 14400 < th dose independent rect. 11 1
733 93.96 wind 1.0 10 < th dose independent rect. 6 21
742 93.97 precipitation 0.1 30 < th dose independent rect. 21 23
743 93.97 wind 1.0 14400 < th dose dependent rect. 22 1
747 93.97 precipitation 0.1 30 < th dose dependent rect. 21 23
752 93.98 humidity 90.0 90 < th dose independent rect. 1 20
759 93.99 atmosphere 1015.0 30 < th dose independent rect. 3 23
782 94.03 wind 1.0 10 < th dose independent rect. 12 2
787 94.04 humidity 90.0 270 < th dose independent rect. 23 9
804 94.05 wind 1.0 10 < th dose independent rect. 8 19
813 94.06 wind 9.0 30 < th dose independent rect. 21 23
815 94.06 temperature 25.0 720 > th dose dependent rect. 3 6
817 94.07 wind 5.0 14400 > th dose independent rect. 11 2
839 94.11 humidity 50.0 30 > th dose independent rect. 21 23
842 94.12 wind 5.0 14400 < th dose independent rect. 9 6
853 94.13 atmosphere 1000.0 720 > th dose independent rect. 21 8
870 94.16 wind 5.0 14400 > th dose independent rect. 9 6
883 94.18 wind 7.0 14400 > th dose dependent rect. 23 3
888 94.19 humidity 90.0 720 < th dose independent rect. 1 3
890 94.19 humidity 90.0 90 < th dose dependent rect. 2 6
897 94.21 atmosphere 995.0 720 > th dose independent rect. 23 16
909 94.23 humidity 90.0 30 > th dose independent rect. 3 23
919 94.25 temperature 30.0 720 < th dose independent rect. 15 16
920 94.25 atmosphere 1000.0 90 > th dose independent rect. 3 16
927 94.26 precipitation 0.1 720 < th dose independent rect. 15 8
934 94.26 precipitation 0.1 720 < th dose dependent rect. 15 8
941 94.28 humidity 80.0 4320 < th dose independent rect. 19 1
958 94.28 wind 7.0 14400 > th dose independent rect. 23 3
965 94.28 humidity 90.0 10 < th dose dependent rect. 7 1
972 94.28 atmosphere 995.0 90 > th dose dependent rect. 3 16
977 94.29 precipitation 0.1 720 < th dose independent rect. 3 16
978 94.29 precipitation 0.1 14400 < th dose independent rect. 24 16
984 94.29 radiation 1.0 720 < th dose dependent rect. 21 8
986 94.29 precipitation 0.1 720 < th dose dependent rect. 3 16
987 94.29 precipitation 0.1 14400 < th dose dependent rect. 24 16
989 94.30 wind 7.0 14400 < th dose independent rect. 23 3
992 94.30 precipitation 0.1 14400 > th dose independent rect. 24 16
999 94.30 wind 3.0 90 < th dose dependent rect. 6 21
1000 94.31 atmosphere 1000.0 270 < th dose independent rect. 7 5