BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0234100 Os03g0234100|J065029A17
(167 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0234100 Similar to Non-symbiotic hemoglobin 4 (rHb4) (... 345 1e-95
Os03g0234000 Non-symbiotic hemoglobin 3 (rHb3) (ORYsa GLB1c) 300 3e-82
Os03g0226200 Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b) 267 2e-72
Os03g0233900 Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a) 260 3e-70
Os05g0517600 Similar to Non-symbiotic hemoglobin 1 (rHb1) (... 179 8e-46
>Os03g0234100 Similar to Non-symbiotic hemoglobin 4 (rHb4) (ORYsa GLB1d)
Length = 167
Score = 345 bits (884), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MAFASASNGAVRFTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNS 60
MAFASASNGAVRFTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNS
Sbjct: 1 MAFASASNGAVRFTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNS 60
Query: 61 DVPLEKNPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEV 120
DVPLEKNPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEV
Sbjct: 61 DVPLEKNPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEV 120
Query: 121 ARFALLETIKDGIPASMWSPEMKNAWGEAYEHLVAAIKEGMKPVALL 167
ARFALLETIKDGIPASMWSPEMKNAWGEAYEHLVAAIKEGMKPVALL
Sbjct: 121 ARFALLETIKDGIPASMWSPEMKNAWGEAYEHLVAAIKEGMKPVALL 167
>Os03g0234000 Non-symbiotic hemoglobin 3 (rHb3) (ORYsa GLB1c)
Length = 169
Score = 300 bits (769), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 143/159 (89%), Positives = 150/159 (94%)
Query: 7 SNGAVRFTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNSDVPLEK 66
S GAVRFTEEQEALVLKSWAIMK+DSA+IGHRFFLKIFEVAPSAR LFSFLRNSDVPLEK
Sbjct: 10 SRGAVRFTEEQEALVLKSWAIMKNDSAHIGHRFFLKIFEVAPSARQLFSFLRNSDVPLEK 69
Query: 67 NPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALL 126
NP LK HAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSD HFEVA+FALL
Sbjct: 70 NPKLKIHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDAHFEVAKFALL 129
Query: 127 ETIKDGIPASMWSPEMKNAWGEAYEHLVAAIKEGMKPVA 165
ETIK+ +PASMWSP MK AWGEAY+HLVAAIK+GMKP A
Sbjct: 130 ETIKEAVPASMWSPAMKGAWGEAYDHLVAAIKQGMKPAA 168
>Os03g0226200 Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b)
Length = 169
Score = 267 bits (683), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 126/157 (80%), Positives = 136/157 (86%)
Query: 7 SNGAVRFTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNSDVPLEK 66
S GAV F+EEQEALVLKSWAIMK DSANIG RFFLKIFEVAPSA +FSFLRNSDVPLEK
Sbjct: 11 SGGAVSFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSFLRNSDVPLEK 70
Query: 67 NPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALL 126
NP LK HAM+VFVMTCEAAAQLRK G+VTVRDTT+KRLG+THFK GV D HFEV RFALL
Sbjct: 71 NPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALL 130
Query: 127 ETIKDGIPASMWSPEMKNAWGEAYEHLVAAIKEGMKP 163
ETIK+ +P MWSP MK+AW EAY LVAAIK+ MKP
Sbjct: 131 ETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKP 167
>Os03g0233900 Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a)
Length = 166
Score = 260 bits (665), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 124/164 (75%), Positives = 139/164 (84%), Gaps = 1/164 (0%)
Query: 1 MAFASASNG-AVRFTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRN 59
MA +N AV F+EEQEALVLKSWAI+K DSANI RFFLKIFEVAPSA +FSFLRN
Sbjct: 1 MALVEDNNAVAVSFSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRN 60
Query: 60 SDVPLEKNPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFE 119
SDVPLEKNP LK HAM+VFVMTCEAAAQLRK G+VTVRDTT+KRLG+TH K GV D HFE
Sbjct: 61 SDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFE 120
Query: 120 VARFALLETIKDGIPASMWSPEMKNAWGEAYEHLVAAIKEGMKP 163
V +FALL+TIK+ +PA MWSP MK+AW EAY+HLVAAIK+ MKP
Sbjct: 121 VVKFALLDTIKEEVPADMWSPAMKSAWSEAYDHLVAAIKQEMKP 164
>Os05g0517600 Similar to Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a)
Length = 145
Score = 179 bits (454), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 111/155 (71%), Gaps = 14/155 (9%)
Query: 13 FTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNS--DVPLEKNPNL 70
F+E QE LVL+SW MK DS +I +FFL+IFE+AP+A+ +FSFLR+S DVPLE +P
Sbjct: 3 FSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHPK- 61
Query: 71 KKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALLETIK 130
CE+A QLRKTG V VR+ T++RLG+TH K GV+D +FEV + ALL+TIK
Sbjct: 62 ----------ACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDTIK 111
Query: 131 DGIPASMWSPEMKNAWGEAYEHLVAAIKEGMKPVA 165
D +P MWSPEMK AW EAY+ L AAIKE MK A
Sbjct: 112 DAVP-EMWSPEMKGAWEEAYDQLAAAIKEEMKKAA 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,304,091
Number of extensions: 186325
Number of successful extensions: 360
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 5
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)