Os03g0233900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a).
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Os03g0233900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 254.25 | 0.749 | 3.78 | -0.525 | 0.344 | 1.36 | -0.791 | -0.308 | -0.215 | 23.9 | 24.53 | 2966 | -- | -- |
| 252.46 | 0.74 | 3.79 | -0.623 | 0.399 | 1.34 | -0.76 | -- | -0.23 | 0.153 | 24.6 | 2754 | -- | -- |
| 253.58 | 0.742 | 3.79 | -0.556 | 0.456 | 1.35 | -- | -0.167 | -0.224 | 22.7 | 24.66 | 2701 | -- | -- |
| 253.6 | 0.742 | 3.8 | -0.61 | 0.463 | 1.33 | -- | -- | -0.24 | 22.7 | 24.63 | 2700 | -- | -- |
| 264.43 | 0.757 | 3.78 | -0.538 | -- | 1.31 | -- | -0.168 | -0.228 | -- | 24.5 | 2933 | -- | -- |
| 298.29 | 0.81 | 3.88 | -1.07 | 0.197 | -- | 1.84 | -- | -0.643 | 17.3 | -- | -- | -- | -- |
| 300.24 | 0.811 | 3.89 | -1.08 | 0.39 | -- | -- | -- | -0.638 | 21 | -- | -- | -- | -- |
| 264.42 | 0.757 | 3.79 | -0.597 | -- | 1.29 | -- | -- | -0.246 | -- | 24.54 | 2893 | -- | -- |
| 262.08 | 0.754 | 3.77 | -- | 0.45 | 1.51 | -- | -- | -0.117 | 22.8 | 24.58 | 2749 | -- | -- |
| 309 | 0.821 | 3.88 | -1.08 | -- | -- | -- | -- | -0.64 | -- | -- | -- | -- | -- |
| 331.09 | 0.851 | 3.86 | -- | 0.392 | -- | -- | -- | -0.517 | 20.8 | -- | -- | -- | -- |
| 271.97 | 0.768 | 3.76 | -- | -- | 1.38 | -- | -- | -0.143 | -- | 24.1 | 3056 | -- | -- |
| 339.85 | 0.86 | 3.85 | -- | -- | -- | -- | -- | -0.52 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 251.65 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 2 | 253.37 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 4 | 253.71 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 6 | 253.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 7 | 253.79 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 12 | 253.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 14 | 253.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 15 | 253.97 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 19 | 254.02 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 22 | 5 |
| 26 | 254.09 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 30 | 254.14 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 37 | 254.25 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 10 |
| 48 | 254.32 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 49 | 254.32 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 118 | 254.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 122 | 254.66 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 163 | 254.82 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 12 | 6 |
| 319 | 255.53 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 329 | 255.57 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 394 | 255.77 | radiation | 1.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 421 | 255.89 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 13 | 14 |
| 427 | 255.90 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 442 | 255.94 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 10 |
| 496 | 256.19 | temperature | 25.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 509 | 256.25 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 516 | 256.27 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 582 | 256.48 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 617 | 256.60 | temperature | 20.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 644 | 256.69 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 651 | 256.71 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 671 | 256.78 | temperature | 10.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 795 | 257.22 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 837 | 257.31 | temperature | 25.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 839 | 257.32 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 906 | 257.52 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 934 | 257.58 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 935 | 257.58 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 15 |
| 941 | 257.59 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 18 |
| 973 | 257.67 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 997 | 257.69 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 16 |