Os03g0234000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-symbiotic hemoglobin 3 (rHb3) (ORYsa GLB1c).
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Os03g0234000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-symbiotic hemoglobin 3 (rHb3) (ORYsa GLB1c).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 374.38 | 0.909 | 3.2 | 0.255 | 0.205 | 1.33 | -0.796 | -0.218 | -0.0362 | 5.4 | 0.7979 | 1459 | -- | -- |
| 374.26 | 0.901 | 3.21 | 0.244 | 0.208 | 1.38 | -0.786 | -- | -0.0422 | 5.4 | 0.65 | 1456 | -- | -- |
| 375.78 | 0.903 | 3.21 | 0.196 | 0.203 | 1.52 | -- | 0.552 | -0.0444 | 5.35 | 0.53 | 1456 | -- | -- |
| 375.79 | 0.903 | 3.2 | 0.242 | 0.206 | 1.37 | -- | -- | -0.0361 | 4.79 | 0.6382 | 1452 | -- | -- |
| 377.88 | 0.905 | 3.21 | 0.224 | -- | 1.46 | -- | 0.309 | -0.0368 | -- | 0.5156 | 1462 | -- | -- |
| 393.86 | 0.93 | 3.25 | -0.105 | 0.221 | -- | -0.835 | -- | -0.212 | 4.49 | -- | -- | -- | -- |
| 395.69 | 0.932 | 3.25 | -0.0994 | 0.216 | -- | -- | -- | -0.208 | 3.95 | -- | -- | -- | -- |
| 377.89 | 0.905 | 3.21 | 0.246 | -- | 1.39 | -- | -- | -0.0386 | -- | 0.58 | 1465 | -- | -- |
| 377.11 | 0.904 | 3.21 | -- | 0.211 | 1.24 | -- | -- | -0.0723 | 4.7 | 0.68 | 1450 | -- | -- |
| 398.24 | 0.932 | 3.25 | -0.0905 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 395.95 | 0.931 | 3.24 | -- | 0.214 | -- | -- | -- | -0.197 | 3.95 | -- | -- | -- | -- |
| 379.27 | 0.907 | 3.22 | -- | -- | 1.27 | -- | -- | -0.0731 | -- | 0.72 | 1475 | -- | -- |
| 398.46 | 0.932 | 3.24 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 365.95 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 366.69 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 3 | 366.98 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 17 | 369.45 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 22 | 369.73 | wind | 7 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 24 | 369.76 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 29 | 369.90 | wind | 1 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 35 | 370.04 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 51 | 370.62 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 64 | 370.88 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 89 | 371.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 101 | 371.34 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 19 |
| 104 | 371.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 117 | 371.48 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 136 | 371.66 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 1 | 1 |
| 153 | 371.82 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 164 | 372.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 172 | 372.07 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 195 | 372.26 | wind | 7 | 14400 | < th | dose independent | sin | 3 | NA |
| 203 | 372.29 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 217 | 372.37 | wind | 1 | 720 | < th | dose independent | rect. | 21 | 1 |
| 233 | 372.44 | radiation | 40 | 43200 | > th | dose dependent | rect. | 15 | 20 |
| 318 | 372.56 | wind | 7 | 14400 | > th | dose independent | sin | 3 | NA |
| 328 | 372.60 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 333 | 372.63 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 339 | 372.65 | wind | 7 | 14400 | > th | dose dependent | sin | 1 | NA |
| 353 | 372.69 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 375 | 372.71 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 446 | 372.82 | radiation | 40 | 43200 | < th | dose independent | sin | 9 | NA |
| 580 | 373.09 | radiation | 40 | 43200 | > th | dose independent | rect. | 15 | 20 |
| 594 | 373.13 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 734 | 373.25 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 738 | 373.25 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 754 | 373.25 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |