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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0517600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0374) R2 : 0.000263
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0273 (0.0788) R2dN8 : 0.000339 R2N8 : 0.000263
σ : 0.705
deviance : 227.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.82 0.681 2.9 0.0633 0.131 0.162 0.339 4.8 0.0592 3.4 46.46 641 -- --
211.25 0.677 2.94 -0.0369 0.171 1.7 -0.0437 -- -0.0184 3.41 46.06 621 -- --
209.98 0.675 2.9 0.0616 0.134 0.135 -- 4.8 0.0575 3.63 46.06 624 -- --
210.23 0.675 2.93 0.0176 0.139 2.05 -- -- 0.0513 3.15 45.82 620 -- --
211 0.677 2.9 0.0698 -- -0.117 -- 5.52 0.0592 -- 45.98 624 -- --
224.98 0.703 2.93 0.197 0.123 -- 0.534 -- 0.0479 0.408 -- -- -- --
226.08 0.704 2.93 0.175 0.132 -- -- -- 0.0443 1.85 -- -- -- --
211.17 0.677 2.93 0.00753 -- 2.05 -- -- 0.0601 -- 45.85 620 -- --
210.18 0.675 2.93 -- 0.138 2.02 -- -- 0.0528 3.61 46 620 -- --
227.13 0.704 2.93 0.181 -- -- -- -- 0.0473 -- -- -- -- --
226.89 0.705 2.94 -- 0.135 -- -- -- 0.0248 1.89 -- -- -- --
211.17 0.677 2.93 -- -- 2.07 -- -- 0.0587 -- 45.82 620 -- --
227.99 0.705 2.94 -- -- -- -- -- 0.0273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.01 temperature 25.0 90 > th dose independent rect. 2 1
2 199.99 humidity 80.0 30 < th dose dependent rect. 21 4
5 200.18 temperature 25.0 90 > th dose dependent rect. 2 1
11 201.75 humidity 80.0 10 < th dose independent rect. 21 4
20 202.67 atmosphere 1015.0 30 < th dose independent rect. 3 23
40 206.76 humidity 80.0 90 < th dose dependent rect. 22 1
41 206.78 wind 1.0 30 < th dose independent rect. 17 1
52 206.78 wind 1.0 30 < th dose dependent rect. 17 1
73 207.39 humidity 80.0 720 < th dose independent rect. 24 1
75 207.39 humidity 80.0 720 < th dose dependent rect. 24 1
78 207.46 humidity 80.0 10 < th dose independent rect. 24 4
83 207.47 humidity 80.0 10 < th dose dependent rect. 24 4
89 207.56 humidity 80.0 10 < th dose independent rect. 24 2
94 207.56 humidity 80.0 10 < th dose dependent rect. 24 2
98 207.59 atmosphere 1005.0 30 > th dose dependent rect. 2 1
108 207.72 atmosphere 1005.0 30 > th dose independent rect. 2 1
129 207.81 wind 3.0 30 < th dose dependent rect. 2 1
131 207.83 humidity 70.0 90 < th dose independent rect. 17 1
133 207.86 wind 1.0 30 < th dose independent rect. 2 1
140 207.92 temperature 25.0 30 < th dose independent rect. 2 1
142 207.94 humidity 70.0 30 < th dose independent rect. 17 3
157 207.97 temperature 10.0 30 > th dose independent rect. 2 1
160 207.97 humidity 50.0 30 > th dose independent rect. 2 1
165 207.97 atmosphere 1010.0 30 < th dose independent rect. 2 1
167 207.97 radiation 1.0 30 < th dose independent rect. 2 1
172 207.97 precipitation 0.1 30 < th dose independent rect. 2 1
173 207.97 temperature 10.0 30 > th dose independent rect. 3 23
174 207.97 radiation 1.0 30 < th dose dependent rect. 2 1
179 207.97 precipitation 0.1 30 < th dose dependent rect. 2 1
180 207.98 humidity 50.0 30 > th dose dependent rect. 2 1
183 208.01 temperature 20.0 270 < th dose independent rect. 19 4
184 208.01 wind 9.0 30 < th dose independent rect. 3 23
190 208.18 temperature 30.0 30 < th dose dependent rect. 2 1
194 208.33 atmosphere 1015.0 30 < th dose dependent rect. 2 1
209 208.48 wind 1.0 30 > th dose independent rect. 2 1
213 208.59 humidity 70.0 90 < th dose dependent rect. 17 2
217 208.63 temperature 20.0 270 < th dose independent rect. 13 10
238 208.73 atmosphere 1000.0 30 < th dose dependent rect. 3 3
240 208.75 atmosphere 1000.0 10 < th dose independent rect. 3 3
278 208.87 atmosphere 1000.0 270 < th dose independent rect. 2 1
280 208.87 atmosphere 1000.0 270 < th dose dependent rect. 2 1
320 209.11 precipitation 0.1 10 < th dose independent rect. 3 23
333 209.11 precipitation 0.1 10 < th dose dependent rect. 3 23
347 209.46 atmosphere 1000.0 10 > th dose independent rect. 3 23
356 209.57 temperature 20.0 270 < th dose dependent rect. 18 6
389 210.12 humidity 50.0 720 > th dose independent rect. 23 16
415 210.41 wind 7.0 270 > th dose dependent rect. 20 1
418 210.48 humidity 50.0 720 < th dose dependent rect. 13 2
426 210.57 humidity 50.0 720 < th dose dependent rect. 12 4
429 210.61 radiation 1.0 43200 < th dose dependent rect. 3 1
447 210.83 temperature 20.0 270 < th dose independent sin 20 NA
451 210.95 temperature 20.0 10 < th dose dependent rect. 21 3
506 211.15 atmosphere 1015.0 720 < th dose independent rect. 23 16
563 211.31 atmosphere 1005.0 30 > th dose dependent rect. 15 12
568 211.36 humidity 50.0 720 > th dose independent rect. 1 16
572 211.42 humidity 50.0 720 < th dose independent rect. 12 3
592 211.43 humidity 50.0 720 < th dose dependent sin 0 NA
610 211.49 temperature 20.0 10 < th dose dependent rect. 15 9
654 211.57 wind 7.0 270 > th dose independent rect. 20 1
656 211.59 temperature 20.0 270 > th dose independent sin 20 NA
662 211.61 humidity 50.0 720 < th dose dependent no NA NA
805 211.62 wind 9.0 1440 < th dose independent rect. 3 1
806 211.62 temperature 10.0 1440 > th dose independent rect. 3 1
809 211.62 temperature 30.0 1440 < th dose independent rect. 3 1
813 211.62 humidity 50.0 1440 > th dose independent rect. 3 1
822 211.62 humidity 90.0 90 < th dose independent rect. 2 1
823 211.62 atmosphere 995.0 1440 > th dose independent rect. 3 1
824 211.62 radiation 1.0 1440 < th dose independent rect. 3 1
845 211.62 humidity 50.0 720 > th dose independent rect. 11 16
846 211.62 temperature 10.0 1440 > th dose independent rect. 4 23
849 211.62 radiation 1.0 1440 < th dose dependent rect. 3 1
973 212.02 humidity 50.0 720 > th dose independent rect. 7 8