BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0517600 Os05g0517600|Os05g0517600
         (145 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16060.1  | chr2:6982782-6983522 REVERSE LENGTH=161            173   3e-44
AT3G10520.1  | chr3:3276516-3277765 REVERSE LENGTH=159            137   1e-33

>AT2G16060.1 | chr2:6982782-6983522 REVERSE LENGTH=161
          Length = 160

 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/142 (60%), Positives = 102/142 (71%), Gaps = 13/142 (9%)

Query: 3   FSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHPK- 61
           F+E QE LV++SW  MKK+S  + LK F++IFEIAP  K+MFSFLRDS   +P E +PK 
Sbjct: 9   FTEEQEALVVKSWSVMKKNSAELGLKLFIKIFEIAPTTKKMFSFLRDS--PIPAEQNPKL 66

Query: 62  ----------ACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDTIK 111
                      CESA QLRKTG V VRE TL+RLGA+H K GV D +FEV K ALL+TIK
Sbjct: 67  KPHAMSVFVMCCESAVQLRKTGKVTVRETTLKRLGASHSKYGVVDEHFEVAKYALLETIK 126

Query: 112 DAVPEMWSPEMKGAWEEAYDQL 133
           +AVPEMWSPEMK AW +AYD L
Sbjct: 127 EAVPEMWSPEMKVAWGQAYDHL 148



>AT3G10520.1 | chr3:3276516-3277765 REVERSE LENGTH=159
          Length = 158

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 98/144 (68%), Gaps = 13/144 (9%)

Query: 1   MGFSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHP 60
           +GF+E QE LV  SW+ +K+D    +L FF +I EIAPAAK +FSFLRDS D+VP  N+P
Sbjct: 4   IGFTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKGLFSFLRDS-DEVP-HNNP 61

Query: 61  K-----------ACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDT 109
           K            CE+A QLR+ G V V + TL+ LG+ H+K+GV D +FEVVK ALL T
Sbjct: 62  KLKAHAVKVFKMTCETAIQLREEGKVVVADTTLQYLGSIHLKSGVIDPHFEVVKEALLRT 121

Query: 110 IKDAVPEMWSPEMKGAWEEAYDQL 133
           +K+ + E ++ E++GAW +AYD L
Sbjct: 122 LKEGLGEKYNEEVEGAWSQAYDHL 145



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,769,058
Number of extensions: 93937
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 2
Length of query: 145
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 56
Effective length of database: 8,666,545
Effective search space: 485326520
Effective search space used: 485326520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)