BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0511000 Os05g0511000|AK067012
(271 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0511000 Protein of unknown function DUF887, TLC-like f... 532 e-151
Os01g0768200 Protein of unknown function DUF887, TLC-like f... 404 e-113
Os03g0666700 Protein of unknown function DUF887, TLC-like f... 377 e-105
Os05g0485300 Protein of unknown function DUF887, TLC-like f... 249 1e-66
Os01g0817100 Protein of unknown function DUF887, TLC-like f... 248 4e-66
>Os05g0511000 Protein of unknown function DUF887, TLC-like family protein
Length = 271
Score = 532 bits (1370), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/271 (96%), Positives = 262/271 (96%)
Query: 1 MDLPLMXXXXXXXXXELLVKDYLLADSYVPYASVLGGILMCKLSYDFTRFISSFYFKGYG 60
MDLPLM ELLVKDYLLADSYVPYASVLGGILMCKLSYDFTRFISSFYFKGYG
Sbjct: 1 MDLPLMAAKAYKYKAELLVKDYLLADSYVPYASVLGGILMCKLSYDFTRFISSFYFKGYG 60
Query: 61 SLTKMQKVEWNNRGMSTVHAIFITLMSAYLVFFSGLFSDQQDGPVTFRSSSLSNFTLGVS 120
SLTKMQKVEWNNRGMSTVHAIFITLMSAYLVFFSGLFSDQQDGPVTFRSSSLSNFTLGVS
Sbjct: 61 SLTKMQKVEWNNRGMSTVHAIFITLMSAYLVFFSGLFSDQQDGPVTFRSSSLSNFTLGVS 120
Query: 121 VGYFIADLAMILWFYPSLGGMEYLVHHVLSLTAVTYTMLSGEGQLYTYMSLISETTTPGI 180
VGYFIADLAMILWFYPSLGGMEYLVHHVLSLTAVTYTMLSGEGQLYTYMSLISETTTPGI
Sbjct: 121 VGYFIADLAMILWFYPSLGGMEYLVHHVLSLTAVTYTMLSGEGQLYTYMSLISETTTPGI 180
Query: 181 NLRWFLDVAGMKRSKRYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYLL 240
NLRWFLDVAGMKRSKRYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYLL
Sbjct: 181 NLRWFLDVAGMKRSKRYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYLL 240
Query: 241 VCVVPAILFVMNMIWFSKILRGLKKTLAKRH 271
VCVVPAILFVMNMIWFSKILRGLKKTLAKRH
Sbjct: 241 VCVVPAILFVMNMIWFSKILRGLKKTLAKRH 271
>Os01g0768200 Protein of unknown function DUF887, TLC-like family protein
Length = 275
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/256 (75%), Positives = 217/256 (84%)
Query: 16 ELLVKDYLLADSYVPYASVLGGILMCKLSYDFTRFISSFYFKGYGSLTKMQKVEWNNRGM 75
E LVKDYLLAD YV Y +VLGGILMCK+ YD T ISS Y+KGYGSLTK+QK+EWNNRGM
Sbjct: 20 ESLVKDYLLADCYVSYTAVLGGILMCKMVYDITHLISSLYYKGYGSLTKIQKLEWNNRGM 79
Query: 76 STVHAIFITLMSAYLVFFSGLFSDQQDGPVTFRSSSLSNFTLGVSVGYFIADLAMILWFY 135
STVHA+FITLMS YLVFFS LFSD+ DGPVT RSS+LSNFTLGVS+GYFIADLAM+ W Y
Sbjct: 80 STVHAMFITLMSVYLVFFSNLFSDELDGPVTVRSSNLSNFTLGVSLGYFIADLAMLSWAY 139
Query: 136 PSLGGMEYLVHHVLSLTAVTYTMLSGEGQLYTYMSLISETTTPGINLRWFLDVAGMKRSK 195
PSLGGMEY++HH+LS+ ++ Y + S EGQLYTYM LISETTTPGINLRWFLD GMKRSK
Sbjct: 140 PSLGGMEYVLHHLLSIISLVYAIYSEEGQLYTYMVLISETTTPGINLRWFLDTVGMKRSK 199
Query: 196 RYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVPAILFVMNMIW 255
Y+VNGV MF+ WLVARIILF+YLFY I+ H DQ+KQM TF +L+ VP IL VMN +W
Sbjct: 200 AYLVNGVTMFVAWLVARIILFIYLFYHIYFHIDQVKQMRTFSCILIFAVPTILLVMNTVW 259
Query: 256 FSKILRGLKKTLAKRH 271
F KILRGLKKTLAKR
Sbjct: 260 FVKILRGLKKTLAKRQ 275
>Os03g0666700 Protein of unknown function DUF887, TLC-like family protein
Length = 266
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/254 (69%), Positives = 210/254 (82%)
Query: 16 ELLVKDYLLADSYVPYASVLGGILMCKLSYDFTRFISSFYFKGYGSLTKMQKVEWNNRGM 75
+ L++DYLLAD VPY SVL GI +CK++YD TR +SSFYFKGY SLTK+Q+VEWNNRGM
Sbjct: 11 QELMRDYLLADPLVPYTSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKIQRVEWNNRGM 70
Query: 76 STVHAIFITLMSAYLVFFSGLFSDQQDGPVTFRSSSLSNFTLGVSVGYFIADLAMILWFY 135
S+ HAIFIT +S YLV + LFSD+ GP+TFR+S +S F LGVSVGYFIADLAMI W Y
Sbjct: 71 SSAHAIFITAISLYLVMSTDLFSDRLKGPITFRNSIISTFALGVSVGYFIADLAMIFWLY 130
Query: 136 PSLGGMEYLVHHVLSLTAVTYTMLSGEGQLYTYMSLISETTTPGINLRWFLDVAGMKRSK 195
PSLGGMEY+VHH LSL A+ YTMLSGEGQ YTYM LISETTTP INLRWFLD AG+K+S
Sbjct: 131 PSLGGMEYIVHHTLSLVAIAYTMLSGEGQFYTYMVLISETTTPEINLRWFLDTAGLKKSS 190
Query: 196 RYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVPAILFVMNMIW 255
Y+VNG+ MF+ WLVARI+LF+Y+FY I+LHY Q+ QM FGY L +VP++LFVMN +W
Sbjct: 191 AYLVNGILMFVAWLVARILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVPSVLFVMNTMW 250
Query: 256 FSKILRGLKKTLAK 269
F KIL+G+KKTL K
Sbjct: 251 FMKILKGVKKTLGK 264
>Os05g0485300 Protein of unknown function DUF887, TLC-like family protein
Length = 263
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 1/238 (0%)
Query: 32 ASVLGGILMCKLSYDFTRFISSFYFKGYGSLTKMQKVEWNNRGMSTVHAIFITLMSAYLV 91
ASVL GILMC YD TR +SS +KGY L ++ K+EWNNRG ST HA+ ++S YL+
Sbjct: 15 ASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFSTFHALVAAVVSFYLL 74
Query: 92 FFSGLFSDQQDGPVTF-RSSSLSNFTLGVSVGYFIADLAMILWFYPSLGGMEYLVHHVLS 150
S LFS G + R S +S+ GVS+GYF+ DL MILW +PSLGG EYL+HH LS
Sbjct: 75 VISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFPSLGGKEYLLHHGLS 134
Query: 151 LTAVTYTMLSGEGQLYTYMSLISETTTPGINLRWFLDVAGMKRSKRYVVNGVAMFLTWLV 210
+ A++ +LSG+G +Y M LI+E TTP +NLRW+LD+AG K SK Y+ NGVA+F WLV
Sbjct: 135 MYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKLYLYNGVALFAGWLV 194
Query: 211 ARIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVPAILFVMNMIWFSKILRGLKKTLA 268
AR+ILF+Y F ++LH+DQ++ + G+ + VP + MN++WF KI +G+ K ++
Sbjct: 195 ARVILFVYFFAHVYLHFDQVRTVFPLGFYSMMAVPPAMSAMNLLWFRKICKGMVKAMS 252
>Os01g0817100 Protein of unknown function DUF887, TLC-like family protein
Length = 260
Score = 248 bits (632), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/239 (50%), Positives = 164/239 (68%), Gaps = 3/239 (1%)
Query: 32 ASVLGGILMCKLSYDFTRFISSFYFKGYGSLTKMQKVEWNNRGMSTVHAIFITLMSAYLV 91
ASVL GI MC YD T+ +SS FKGY +++ M+KVEWNNRG ST HA+ ++S YLV
Sbjct: 15 ASVLAGIAMCAAVYDITQKVSSHCFKGYDNISPMKKVEWNNRGFSTFHALVAAVVSFYLV 74
Query: 92 FFSGLFSDQQDGPVTFRSSSLSNFTLGVSVGYFIADLAMILWFYPSLGGMEYLVHHVLSL 151
S LF + R+S LS+ GVS+GYF+ DL MILW++PSLGG EYL+HH LS+
Sbjct: 75 VISDLF---HSNIIIDRNSWLSDAMFGVSIGYFLTDLVMILWYFPSLGGKEYLLHHGLSM 131
Query: 152 TAVTYTMLSGEGQLYTYMSLISETTTPGINLRWFLDVAGMKRSKRYVVNGVAMFLTWLVA 211
A+ +LSG+ +Y M L +E TTP +NLRW+L+VAG K Y+ NG+A+F+ WLVA
Sbjct: 132 YAICLALLSGKAHMYILMVLFTEATTPFVNLRWYLEVAGKKTHNLYLYNGLALFVGWLVA 191
Query: 212 RIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVPAILFVMNMIWFSKILRGLKKTLAKR 270
R+ILF+Y F ++ H+DQ+K + G+ + VP L VMN+ WF KI +G+ KTL+KR
Sbjct: 192 RVILFIYFFTHMYFHFDQVKSIFPLGFYSILTVPPALAVMNLFWFWKIFKGMLKTLSKR 250
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.142 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,770,897
Number of extensions: 285391
Number of successful extensions: 625
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 5
Length of query: 271
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 172
Effective length of database: 11,866,615
Effective search space: 2041057780
Effective search space used: 2041057780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 155 (64.3 bits)