Os03g0666700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF887, TLC-like family protein.
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Os03g0666700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF887, TLC-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.9 | 0.479 | 7.85 | -0.8 | 0.585 | 1.51 | 1.43 | -0.416 | -0.13 | 6.35 | 75.22 | 1267 | -- | -- |
| 104.07 | 0.475 | 7.84 | -0.756 | 0.586 | 1.5 | 1.43 | -- | -0.118 | 6.42 | 75.05 | 1262 | -- | -- |
| 108.72 | 0.486 | 7.85 | -0.775 | 0.59 | 1.48 | -- | -0.341 | -0.131 | 5.91 | 75.01 | 1284 | -- | -- |
| 108.82 | 0.486 | 7.85 | -0.737 | 0.591 | 1.46 | -- | -- | -0.119 | 5.81 | 75.4 | 1293 | -- | -- |
| 126.47 | 0.524 | 7.86 | -0.75 | -- | 1.56 | -- | -0.252 | -0.12 | -- | 75 | 1293 | -- | -- |
| 141.95 | 0.559 | 7.82 | -0.574 | 0.693 | -- | 1.28 | -- | 0.0096 | 5.29 | -- | -- | -- | -- |
| 145.79 | 0.565 | 7.82 | -0.574 | 0.702 | -- | -- | -- | 0.00319 | 4.94 | -- | -- | -- | -- |
| 126.02 | 0.523 | 7.85 | -0.701 | -- | 1.74 | -- | -- | -0.0946 | -- | 76.43 | 1297 | -- | -- |
| 121.7 | 0.514 | 7.82 | -- | 0.567 | 1.55 | -- | -- | 0.00177 | 5.75 | 77 | 1299 | -- | -- |
| 171.71 | 0.612 | 7.83 | -0.548 | -- | -- | -- | -- | 0.0212 | -- | -- | -- | -- | -- |
| 154.47 | 0.581 | 7.81 | -- | 0.691 | -- | -- | -- | 0.0671 | 4.97 | -- | -- | -- | -- |
| 138.15 | 0.547 | 7.83 | -- | -- | 1.7 | -- | -- | 0.00616 | -- | 77.59 | 1296 | -- | -- |
| 179.63 | 0.626 | 7.81 | -- | -- | -- | -- | -- | 0.082 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.47 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 15 | 102.55 | humidity | 50 | 720 | > th | dose dependent | sin | 13 | NA |
| 16 | 102.59 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 28 | 103.33 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 33 | 103.47 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 34 | 103.48 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 39 | 103.62 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 42 | 103.64 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 43 | 103.65 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 114 | 105.10 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 116 | 105.12 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 169 | 106.15 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 183 | 106.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 192 | 106.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 194 | 106.60 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 219 | 106.79 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 226 | 106.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 312 | 107.82 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 318 | 107.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 338 | 107.92 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 19 |
| 356 | 108.03 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 2 |
| 388 | 108.17 | radiation | 10 | 1440 | > th | dose independent | sin | 16 | NA |
| 389 | 108.17 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 391 | 108.18 | radiation | 40 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 394 | 108.19 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 408 | 108.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 437 | 108.34 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 460 | 108.41 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 7 |
| 477 | 108.47 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 478 | 108.49 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 506 | 108.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 561 | 108.74 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 11 |
| 573 | 108.77 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 617 | 108.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 663 | 109.08 | humidity | 80 | 720 | > th | dose independent | sin | 16 | NA |
| 688 | 109.15 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 690 | 109.15 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 703 | 109.16 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 714 | 109.18 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 720 | 109.19 | radiation | 40 | 14400 | > th | dose dependent | sin | 12 | NA |
| 724 | 109.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 773 | 109.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 4 |
| 796 | 109.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 823 | 109.45 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 847 | 109.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 861 | 109.51 | radiation | 30 | 14400 | < th | dose independent | sin | 12 | NA |
| 875 | 109.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 894 | 109.60 | radiation | 40 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 896 | 109.60 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 956 | 109.66 | radiation | 10 | 1440 | < th | dose dependent | sin | 16 | NA |
| 966 | 109.68 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 980 | 109.71 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 7 |