BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0666700 Os03g0666700|AK102010
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0666700 Protein of unknown function DUF887, TLC-like f... 541 e-154
Os05g0511000 Protein of unknown function DUF887, TLC-like f... 389 e-108
Os01g0768200 Protein of unknown function DUF887, TLC-like f... 374 e-104
Os01g0817100 Protein of unknown function DUF887, TLC-like f... 246 8e-66
Os05g0485300 Protein of unknown function DUF887, TLC-like f... 245 2e-65
>Os03g0666700 Protein of unknown function DUF887, TLC-like family protein
Length = 266
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MAMTGYKYQAQELMRDYLLADPLVPYTSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKI 60
MAMTGYKYQAQELMRDYLLADPLVPYTSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKI
Sbjct: 1 MAMTGYKYQAQELMRDYLLADPLVPYTSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKI 60
Query: 61 QRVEWNNRGMSSAHAIFITAISLYLVMSTDLFSDRLKGPITFRNSIISTFALGVSVGYFI 120
QRVEWNNRGMSSAHAIFITAISLYLVMSTDLFSDRLKGPITFRNSIISTFALGVSVGYFI
Sbjct: 61 QRVEWNNRGMSSAHAIFITAISLYLVMSTDLFSDRLKGPITFRNSIISTFALGVSVGYFI 120
Query: 121 ADLAMIFWLYPSLGGMEYIVHHTLSLVAIAYTMLSGEGQFYTYMVLISETTTPEINLRWF 180
ADLAMIFWLYPSLGGMEYIVHHTLSLVAIAYTMLSGEGQFYTYMVLISETTTPEINLRWF
Sbjct: 121 ADLAMIFWLYPSLGGMEYIVHHTLSLVAIAYTMLSGEGQFYTYMVLISETTTPEINLRWF 180
Query: 181 LDTAGLKKSSAYLVNGILMFVAWLVARILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVP 240
LDTAGLKKSSAYLVNGILMFVAWLVARILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVP
Sbjct: 181 LDTAGLKKSSAYLVNGILMFVAWLVARILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVP 240
Query: 241 SVLFVMNTMWFMKILKGVKKTLGKWS 266
SVLFVMNTMWFMKILKGVKKTLGKWS
Sbjct: 241 SVLFVMNTMWFMKILKGVKKTLGKWS 266
>Os05g0511000 Protein of unknown function DUF887, TLC-like family protein
Length = 271
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/264 (68%), Positives = 217/264 (82%)
Query: 1 MAMTGYKYQAQELMRDYLLADPLVPYTSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKI 60
MA YKY+A+ L++DYLLAD VPY SVL GI +CK++YD TR +SSFYFKGY SLTK+
Sbjct: 6 MAAKAYKYKAELLVKDYLLADSYVPYASVLGGILMCKLSYDFTRFISSFYFKGYGSLTKM 65
Query: 61 QRVEWNNRGMSSAHAIFITAISLYLVMSTDLFSDRLKGPITFRNSIISTFALGVSVGYFI 120
Q+VEWNNRGMS+ HAIFIT +S YLV + LFSD+ GP+TFR+S +S F LGVSVGYFI
Sbjct: 66 QKVEWNNRGMSTVHAIFITLMSAYLVFFSGLFSDQQDGPVTFRSSSLSNFTLGVSVGYFI 125
Query: 121 ADLAMIFWLYPSLGGMEYIVHHTLSLVAIAYTMLSGEGQFYTYMVLISETTTPEINLRWF 180
ADLAMI W YPSLGGMEY+VHH LSL A+ YTMLSGEGQ YTYM LISETTTP INLRWF
Sbjct: 126 ADLAMILWFYPSLGGMEYLVHHVLSLTAVTYTMLSGEGQLYTYMSLISETTTPGINLRWF 185
Query: 181 LDTAGLKKSSAYLVNGILMFVAWLVARILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVP 240
LD AG+K+S Y+VNG+ MF+ WLVARI+LF+Y+FY I+LHY Q+ QM FGY L +VP
Sbjct: 186 LDVAGMKRSKRYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVP 245
Query: 241 SVLFVMNTMWFMKILKGVKKTLGK 264
++LFVMN +WF KIL+G+KKTL K
Sbjct: 246 AILFVMNMIWFSKILRGLKKTLAK 269
>Os01g0768200 Protein of unknown function DUF887, TLC-like family protein
Length = 275
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 174/264 (65%), Positives = 216/264 (81%)
Query: 1 MAMTGYKYQAQELMRDYLLADPLVPYTSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKI 60
+A YKY+A+ L++DYLLAD V YT+VL GI +CKM YD+T ++SS Y+KGY SLTKI
Sbjct: 10 VAAKAYKYRAESLVKDYLLADCYVSYTAVLGGILMCKMVYDITHLISSLYYKGYGSLTKI 69
Query: 61 QRVEWNNRGMSSAHAIFITAISLYLVMSTDLFSDRLKGPITFRNSIISTFALGVSVGYFI 120
Q++EWNNRGMS+ HA+FIT +S+YLV ++LFSD L GP+T R+S +S F LGVS+GYFI
Sbjct: 70 QKLEWNNRGMSTVHAMFITLMSVYLVFFSNLFSDELDGPVTVRSSNLSNFTLGVSLGYFI 129
Query: 121 ADLAMIFWLYPSLGGMEYIVHHTLSLVAIAYTMLSGEGQFYTYMVLISETTTPEINLRWF 180
ADLAM+ W YPSLGGMEY++HH LS++++ Y + S EGQ YTYMVLISETTTP INLRWF
Sbjct: 130 ADLAMLSWAYPSLGGMEYVLHHLLSIISLVYAIYSEEGQLYTYMVLISETTTPGINLRWF 189
Query: 181 LDTAGLKKSSAYLVNGILMFVAWLVARILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVP 240
LDT G+K+S AYLVNG+ MFVAWLVARI+LFIY+FYHIY H QV QM F L F VP
Sbjct: 190 LDTVGMKRSKAYLVNGVTMFVAWLVARIILFIYLFYHIYFHIDQVKQMRTFSCILIFAVP 249
Query: 241 SVLFVMNTMWFMKILKGVKKTLGK 264
++L VMNT+WF+KIL+G+KKTL K
Sbjct: 250 TILLVMNTVWFVKILRGLKKTLAK 273
>Os01g0817100 Protein of unknown function DUF887, TLC-like family protein
Length = 260
Score = 246 bits (629), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 159/238 (66%), Gaps = 3/238 (1%)
Query: 27 TSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKIQRVEWNNRGMSSAHAIFITAISLYLV 86
SVL GIA+C YD+T+ +SS FKGY +++ +++VEWNNRG S+ HA+ +S YLV
Sbjct: 15 ASVLAGIAMCAAVYDITQKVSSHCFKGYDNISPMKKVEWNNRGFSTFHALVAAVVSFYLV 74
Query: 87 MSTDLFSDRLKGPITFRNSIISTFALGVSVGYFIADLAMIFWLYPSLGGMEYIVHHTLSL 146
+ +DLF + I RNS +S GVS+GYF+ DL MI W +PSLGG EY++HH LS+
Sbjct: 75 VISDLFHSNI---IIDRNSWLSDAMFGVSIGYFLTDLVMILWYFPSLGGKEYLLHHGLSM 131
Query: 147 VAIAYTMLSGEGQFYTYMVLISETTTPEINLRWFLDTAGLKKSSAYLVNGILMFVAWLVA 206
AI +LSG+ Y MVL +E TTP +NLRW+L+ AG K + YL NG+ +FV WLVA
Sbjct: 132 YAICLALLSGKAHMYILMVLFTEATTPFVNLRWYLEVAGKKTHNLYLYNGLALFVGWLVA 191
Query: 207 RILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVPSVLFVMNTMWFMKILKGVKKTLGK 264
R++LFIY F H+Y H+ QV + G+Y VP L VMN WF KI KG+ KTL K
Sbjct: 192 RVILFIYFFTHMYFHFDQVKSIFPLGFYSILTVPPALAVMNLFWFWKIFKGMLKTLSK 249
>Os05g0485300 Protein of unknown function DUF887, TLC-like family protein
Length = 263
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 159/237 (67%), Gaps = 1/237 (0%)
Query: 27 TSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKIQRVEWNNRGMSSAHAIFITAISLYLV 86
SVL GI +C YD+TR +SS +KGY+ L ++ ++EWNNRG S+ HA+ +S YL+
Sbjct: 15 ASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFSTFHALVAAVVSFYLL 74
Query: 87 MSTDLFSDRLKGPITF-RNSIISTFALGVSVGYFIADLAMIFWLYPSLGGMEYIVHHTLS 145
+ +DLFS + G I R S +S GVS+GYF+ DL MI W +PSLGG EY++HH LS
Sbjct: 75 VISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFPSLGGKEYLLHHGLS 134
Query: 146 LVAIAYTMLSGEGQFYTYMVLISETTTPEINLRWFLDTAGLKKSSAYLVNGILMFVAWLV 205
+ AI+ +LSG+G Y MVLI+E TTP +NLRW+LD AG K S YL NG+ +F WLV
Sbjct: 135 MYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKLYLYNGVALFAGWLV 194
Query: 206 ARILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVPSVLFVMNTMWFMKILKGVKKTL 262
AR++LF+Y F H+YLH+ QV + G+Y VP + MN +WF KI KG+ K +
Sbjct: 195 ARVILFVYFFAHVYLHFDQVRTVFPLGFYSMMAVPPAMSAMNLLWFRKICKGMVKAM 251
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.140 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,716,541
Number of extensions: 273906
Number of successful extensions: 683
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 681
Number of HSP's successfully gapped: 5
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)