Os01g0817100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF887, TLC-like family protein.
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Os01g0817100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF887, TLC-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.34 | 0.416 | 9.78 | 1.48 | 0.982 | -0.773 | -1.19 | 0.191 | 0.681 | 9.32 | 16.12 | 59 | -- | -- |
| 78.44 | 0.412 | 9.78 | 1.47 | 0.978 | -0.767 | -1.04 | -- | 0.68 | 9.29 | 16.1 | 60 | -- | -- |
| 82.46 | 0.423 | 9.79 | 1.49 | 1.02 | -0.785 | -- | -0.0891 | 0.702 | 9.17 | 16.42 | 59 | -- | -- |
| 82.36 | 0.423 | 9.78 | 1.46 | 0.988 | -0.777 | -- | -- | 0.673 | 9.36 | 16.03 | 59 | -- | -- |
| 93.25 | 0.45 | 9.84 | 1.35 | -- | -1.09 | -- | 0.542 | 0.665 | -- | 4.083 | 812 | -- | -- |
| 98.78 | 0.466 | 9.8 | 1.39 | 0.741 | -- | -1.06 | -- | 0.631 | 6.81 | -- | -- | -- | -- |
| 101.38 | 0.472 | 9.8 | 1.37 | 0.743 | -- | -- | -- | 0.633 | 6.48 | -- | -- | -- | -- |
| 94.28 | 0.452 | 9.84 | 1.4 | -- | -1.09 | -- | -- | 0.657 | -- | 3.673 | 807 | -- | -- |
| 135.53 | 0.542 | 9.82 | -- | 0.963 | -0.754 | -- | -- | 0.515 | 8.87 | 19.79 | 59 | -- | -- |
| 130.13 | 0.533 | 9.82 | 1.39 | -- | -- | -- | -- | 0.648 | -- | -- | -- | -- | -- |
| 150.88 | 0.575 | 9.84 | -- | 0.762 | -- | -- | -- | 0.48 | 6.38 | -- | -- | -- | -- |
| 142.99 | 0.557 | 9.85 | -- | -- | -1.03 | -- | -- | 0.535 | -- | 8.183 | 819 | -- | -- |
| 181.03 | 0.628 | 9.85 | -- | -- | -- | -- | -- | 0.494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.82 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 15 | 72.68 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 19 | 72.99 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 25 | 73.49 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 32 | 74.03 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 20 |
| 38 | 74.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 42 | 74.47 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 22 |
| 43 | 74.56 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 17 | 14 |
| 53 | 74.83 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 54 | 74.86 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 56 | 74.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 62 | 75.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 73 | 75.27 | radiation | 20 | 30 | < th | dose independent | rect. | 5 | 10 |
| 93 | 75.63 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 95 | 75.69 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 21 |
| 106 | 75.85 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 127 | 76.16 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 149 | 76.41 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 18 |
| 164 | 76.61 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 184 | 76.79 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 206 | 76.95 | radiation | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 218 | 77.06 | radiation | 30 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 220 | 77.09 | radiation | 10 | 90 | > th | dose independent | sin | 0 | NA |
| 229 | 77.16 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 6 |
| 272 | 77.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 274 | 77.58 | radiation | 10 | 270 | > th | dose independent | sin | 3 | NA |
| 276 | 77.58 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 277 | 77.59 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 3 | 4 |
| 278 | 77.60 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 22 |
| 286 | 77.65 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 296 | 77.70 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 12 |
| 322 | 77.80 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 20 |
| 331 | 77.83 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 357 | 77.94 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 383 | 78.09 | radiation | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 391 | 78.12 | radiation | 10 | 270 | < th | dose dependent | sin | 2 | NA |
| 411 | 78.19 | radiation | 10 | 90 | > th | dose independent | rect. | 7 | 10 |
| 415 | 78.20 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 450 | 78.33 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 491 | 78.46 | radiation | 20 | 270 | < th | dose dependent | sin | 4 | NA |
| 496 | 78.48 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 499 | 78.50 | humidity | 70 | 10 | > th | dose independent | rect. | 5 | 11 |
| 500 | 78.50 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 11 |
| 513 | 78.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 527 | 78.64 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 553 | 78.70 | radiation | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 557 | 78.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 579 | 78.74 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 582 | 78.76 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 656 | 78.95 | humidity | 80 | 10 | > th | dose independent | rect. | 5 | 16 |
| 661 | 78.96 | humidity | 70 | 30 | > th | dose independent | rect. | 5 | 9 |
| 670 | 78.98 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 1 |
| 695 | 79.05 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 7 |
| 702 | 79.07 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 7 |
| 722 | 79.13 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 19 |
| 727 | 79.14 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 17 |
| 740 | 79.18 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 751 | 79.20 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 20 |
| 791 | 79.28 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 22 |
| 813 | 79.30 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 843 | 79.36 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 891 | 79.46 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 5 |
| 897 | 79.47 | radiation | 20 | 90 | < th | dose dependent | sin | 23 | NA |
| 922 | 79.51 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 995 | 79.67 | temperature | 10 | 90 | > th | dose dependent | rect. | 21 | 8 |