Os01g0768200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF887, TLC-like family protein.
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Os01g0768200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF887, TLC-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.93 | 0.175 | 12.3 | -0.182 | 0.323 | -0.311 | -0.384 | 0.767 | 0.149 | 0.497 | 25.6 | 192 | -- | -- |
| 14.5 | 0.177 | 12.3 | -0.0779 | 0.319 | -0.412 | -0.256 | -- | 0.183 | 0.312 | 23.62 | 180 | -- | -- |
| 14.41 | 0.177 | 12.3 | -0.152 | 0.316 | -0.328 | -- | 0.636 | 0.149 | 0.96 | 25.7 | 241 | -- | -- |
| 14.71 | 0.179 | 12.3 | -0.0537 | 0.329 | -0.43 | -- | -- | 0.189 | 0.638 | 23.49 | 170 | -- | -- |
| 18.7 | 0.201 | 12.3 | -0.24 | -- | -0.316 | -- | 1 | 0.133 | -- | 27.7 | 775 | -- | -- |
| 16.74 | 0.192 | 12.3 | 0.0374 | 0.28 | -- | -0.279 | -- | 0.253 | 23.9 | -- | -- | -- | -- |
| 17.03 | 0.193 | 12.3 | 0.0476 | 0.282 | -- | -- | -- | 0.253 | 0.367 | -- | -- | -- | -- |
| 19.73 | 0.207 | 12.3 | -0.0518 | -- | -0.376 | -- | -- | 0.174 | -- | 26.3 | 855 | -- | -- |
| 14.77 | 0.179 | 12.3 | -- | 0.327 | -0.409 | -- | -- | 0.199 | 0.615 | 23.46 | 165 | -- | -- |
| 22.04 | 0.219 | 12.3 | 0.0571 | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
| 17.09 | 0.193 | 12.3 | -- | 0.283 | -- | -- | -- | 0.248 | 0.375 | -- | -- | -- | -- |
| 19.79 | 0.207 | 12.3 | -- | -- | -0.354 | -- | -- | 0.184 | -- | 26.3 | 851 | -- | -- |
| 22.12 | 0.22 | 12.3 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.37 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 2 | 12.39 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 3 | 12.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 4 | 12.56 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 5 | 12.65 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 7 | 12.66 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 10 | 12.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 11 | 12.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 24 | 12.83 | radiation | 20 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 25 | 12.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 26 | 12.85 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 32 | 12.87 | radiation | 10 | 43200 | > th | dose independent | sin | 9 | NA |
| 34 | 12.87 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 49 | 12.88 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 55 | 12.90 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 90 | 12.93 | radiation | 10 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 136 | 12.99 | radiation | 20 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 142 | 13.00 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 146 | 13.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 147 | 13.01 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 155 | 13.02 | radiation | 20 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 156 | 13.02 | radiation | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 172 | 13.02 | radiation | 20 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 205 | 13.03 | radiation | 10 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 238 | 13.04 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 239 | 13.04 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 240 | 13.04 | radiation | 40 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 327 | 13.08 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 392 | 13.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 425 | 13.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 9 |
| 435 | 13.11 | radiation | 30 | 14400 | < th | dose independent | sin | 9 | NA |
| 439 | 13.11 | radiation | 40 | 14400 | > th | dose dependent | sin | 7 | NA |
| 441 | 13.11 | radiation | 40 | 14400 | > th | dose dependent | sin | 5 | NA |
| 443 | 13.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 452 | 13.12 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 472 | 13.12 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 11 |
| 498 | 13.13 | radiation | 40 | 14400 | > th | dose dependent | sin | 2 | NA |
| 509 | 13.14 | radiation | 10 | 43200 | > th | dose independent | no | NA | NA |
| 511 | 13.14 | humidity | 60 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 512 | 13.14 | radiation | 10 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 513 | 13.14 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 604 | 13.14 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 612 | 13.14 | radiation | 20 | 14400 | > th | dose dependent | sin | 9 | NA |
| 617 | 13.14 | radiation | 20 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 626 | 13.14 | radiation | 20 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 632 | 13.14 | radiation | 20 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 784 | 13.16 | humidity | 70 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 787 | 13.16 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 807 | 13.16 | radiation | 40 | 14400 | > th | dose dependent | no | NA | NA |
| 809 | 13.16 | humidity | 50 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 993 | 13.18 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 995 | 13.18 | humidity | 70 | 43200 | < th | dose independent | rect. | 9 | 2 |