BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0768200 Os01g0768200|AK103291
(275 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31300.1 | chr1:11194308-11195955 FORWARD LENGTH=279 318 2e-87
AT4G19645.1 | chr4:10689941-10691298 REVERSE LENGTH=269 316 8e-87
AT4G10360.1 | chr4:6420679-6422108 FORWARD LENGTH=267 223 8e-59
>AT1G31300.1 | chr1:11194308-11195955 FORWARD LENGTH=279
Length = 278
Score = 318 bits (814), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 157/275 (57%), Positives = 207/275 (75%), Gaps = 4/275 (1%)
Query: 4 LSTTS---VVAAKAYKYRAESLVKDYLLADCYVSYTAVLGGILMCKMVYDITHLISSLYY 60
+STTS + A K+Y ++A+ LVK+YLLAD ++ YT+VL GI +CK+VYD+ H IS+ +
Sbjct: 1 MSTTSLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHS 60
Query: 61 KGYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLVFFSNLFSDELDGPVTV-RSSNLSNF 119
K Y LTKIQ++EWNNRG+STVHA+FI+ MS+Y VF+S+LFSD + V RSS LS+
Sbjct: 61 KTYIILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSL 120
Query: 120 TLGVSLGYFIADLAMLSWAYPSLGGMEYVLHHLLSIISLVYAIYSEEGQLYTYMVLISET 179
LG+S+GYF+ADL M+ W YPSLGG+EY++HH LS +++ Y+++S EGQLYTYMVLISE
Sbjct: 121 GLGISIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEI 180
Query: 180 TTPGINLRWFLDTVGMKRSKAYLVNGVTMFVAWLVARXXXXXXXXXXXXXXXDQVKQMRT 239
TTP INLRW+LDT GMK+S AY+VNGV +F+AWLVAR +QV +M
Sbjct: 181 TTPEINLRWYLDTAGMKKSLAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHI 240
Query: 240 FSCILIFAVPTILLVMNTVWFVKILRGLKKTLAKR 274
F +L+F VP L VMN +WF KI+RG+KKTLAKR
Sbjct: 241 FGYVLVFGVPAALGVMNLIWFGKIVRGVKKTLAKR 275
>AT4G19645.1 | chr4:10689941-10691298 REVERSE LENGTH=269
Length = 268
Score = 316 bits (810), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 196/265 (73%), Gaps = 2/265 (0%)
Query: 13 KAYKYRAESLVKDYLLADCYVSYTAVLGGILMCKMVYDITHLISSLYYKGYGSLTKIQKL 72
K+Y+ +AE V+ YLLAD ++ YT+VL GI +CK+VYD+T L SS++ K Y +LTKI+++
Sbjct: 4 KSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKIKRI 63
Query: 73 EWNNRGMSTVHAMFITLMSVYLVFFSNLFSDE--LDGPVTVRSSNLSNFTLGVSLGYFIA 130
EWNNRG+STVHA+FI+ M++Y FFS+LFSD+ L+ R+S LS F LGVS+GYF+A
Sbjct: 64 EWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGYFLA 123
Query: 131 DLAMLSWAYPSLGGMEYVLHHLLSIISLVYAIYSEEGQLYTYMVLISETTTPGINLRWFL 190
DL M+ W YPSLGG EY+LHH LS ++ Y+++S E QLYTYMVLISE TTP INLRW+L
Sbjct: 124 DLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVTTPEINLRWYL 183
Query: 191 DTVGMKRSKAYLVNGVTMFVAWLVARXXXXXXXXXXXXXXXDQVKQMRTFSCILIFAVPT 250
D G+KRSKAYLVNGV +F AWL AR DQV +M TF +L+F VP
Sbjct: 184 DIAGLKRSKAYLVNGVAIFFAWLTARILLFIYMFYHVYTHYDQVIEMHTFGYLLVFVVPI 243
Query: 251 ILLVMNTVWFVKILRGLKKTLAKRQ 275
L VMN +WF KI++GLKKTL KRQ
Sbjct: 244 SLSVMNLIWFGKIVKGLKKTLEKRQ 268
>AT4G10360.1 | chr4:6420679-6422108 FORWARD LENGTH=267
Length = 266
Score = 223 bits (568), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 153/240 (63%), Gaps = 1/240 (0%)
Query: 37 AVLGGILMCKMVYDITHLISSLYYKGYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLVF 96
++ G LMCK+VYD+T IS L + YG L ++EWNNRG ST HA+F ++ S+Y +
Sbjct: 20 SICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAVFTSVASIYFLV 79
Query: 97 FSNLFSDELDGPVTVRSS-NLSNFTLGVSLGYFIADLAMLSWAYPSLGGMEYVLHHLLSI 155
S+ F + + G + S+ LS +G+SLGYF+ADLAM+ W +P+LGG+EYV HH LS+
Sbjct: 80 ISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTLGGIEYVFHHFLSM 139
Query: 156 ISLVYAIYSEEGQLYTYMVLISETTTPGINLRWFLDTVGMKRSKAYLVNGVTMFVAWLVA 215
+++ ++ S + Q Y ++VL+SE TTP +NLRW+LD G K SKAY +NG+ +F+ WLVA
Sbjct: 140 FAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYTLNGIALFLGWLVA 199
Query: 216 RXXXXXXXXXXXXXXXDQVKQMRTFSCILIFAVPTILLVMNTVWFVKILRGLKKTLAKRQ 275
R QVKQ+ + +P L VMN +WF KI +GL KTL+K +
Sbjct: 200 RVLLFIFFFVHMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLLWFWKITKGLIKTLSKAK 259
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,982,884
Number of extensions: 180357
Number of successful extensions: 551
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 3
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)