BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0768200 Os01g0768200|AK103291
(275 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0768200 Protein of unknown function DUF887, TLC-like f... 523 e-149
Os05g0511000 Protein of unknown function DUF887, TLC-like f... 397 e-111
Os03g0666700 Protein of unknown function DUF887, TLC-like f... 345 3e-95
Os05g0485300 Protein of unknown function DUF887, TLC-like f... 221 4e-58
Os01g0817100 Protein of unknown function DUF887, TLC-like f... 213 9e-56
>Os01g0768200 Protein of unknown function DUF887, TLC-like family protein
Length = 275
Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust.
Identities = 260/275 (94%), Positives = 260/275 (94%)
Query: 1 MMDLSTTSVVAAKAYKYRAESLVKDYLLADCYVSYTAVLGGILMCKMVYDITHLISSLYY 60
MMDLSTTSVVAAKAYKYRAESLVKDYLLADCYVSYTAVLGGILMCKMVYDITHLISSLYY
Sbjct: 1 MMDLSTTSVVAAKAYKYRAESLVKDYLLADCYVSYTAVLGGILMCKMVYDITHLISSLYY 60
Query: 61 KGYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLVFFSNLFSDELDGPVTVRSSNLSNFT 120
KGYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLVFFSNLFSDELDGPVTVRSSNLSNFT
Sbjct: 61 KGYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLVFFSNLFSDELDGPVTVRSSNLSNFT 120
Query: 121 LGVSLGYFIADLAMLSWAYPSLGGMEYVLHHLLSIISLVYAIYSEEGQLYTYMVLISETT 180
LGVSLGYFIADLAMLSWAYPSLGGMEYVLHHLLSIISLVYAIYSEEGQLYTYMVLISETT
Sbjct: 121 LGVSLGYFIADLAMLSWAYPSLGGMEYVLHHLLSIISLVYAIYSEEGQLYTYMVLISETT 180
Query: 181 TPGINLRWFLDTVGMKRSKAYLVNGVTMFVAWLVARXXXXXXXXXXXXXXXDQVKQMRTF 240
TPGINLRWFLDTVGMKRSKAYLVNGVTMFVAWLVAR DQVKQMRTF
Sbjct: 181 TPGINLRWFLDTVGMKRSKAYLVNGVTMFVAWLVARIILFIYLFYHIYFHIDQVKQMRTF 240
Query: 241 SCILIFAVPTILLVMNTVWFVKILRGLKKTLAKRQ 275
SCILIFAVPTILLVMNTVWFVKILRGLKKTLAKRQ
Sbjct: 241 SCILIFAVPTILLVMNTVWFVKILRGLKKTLAKRQ 275
>Os05g0511000 Protein of unknown function DUF887, TLC-like family protein
Length = 271
Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/274 (70%), Positives = 219/274 (79%), Gaps = 3/274 (1%)
Query: 2 MDLSTTSVVAAKAYKYRAESLVKDYLLADCYVSYTAVLGGILMCKMVYDITHLISSLYYK 61
MDL ++AAKAYKY+AE LVKDYLLAD YV Y +VLGGILMCK+ YD T ISS Y+K
Sbjct: 1 MDLP---LMAAKAYKYKAELLVKDYLLADSYVPYASVLGGILMCKLSYDFTRFISSFYFK 57
Query: 62 GYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLVFFSNLFSDELDGPVTVRSSNLSNFTL 121
GYGSLTK+QK+EWNNRGMSTVHA+FITLMS YLVFFS LFSD+ DGPVT RSS+LSNFTL
Sbjct: 58 GYGSLTKMQKVEWNNRGMSTVHAIFITLMSAYLVFFSGLFSDQQDGPVTFRSSSLSNFTL 117
Query: 122 GVSLGYFIADLAMLSWAYPSLGGMEYVLHHLLSIISLVYAIYSEEGQLYTYMVLISETTT 181
GVS+GYFIADLAM+ W YPSLGGMEY++HH+LS+ ++ Y + S EGQLYTYM LISETTT
Sbjct: 118 GVSVGYFIADLAMILWFYPSLGGMEYLVHHVLSLTAVTYTMLSGEGQLYTYMSLISETTT 177
Query: 182 PGINLRWFLDTVGMKRSKAYLVNGVTMFVAWLVARXXXXXXXXXXXXXXXDQVKQMRTFS 241
PGINLRWFLD GMKRSK Y+VNGV MF+ WLVAR DQ+KQM TF
Sbjct: 178 PGINLRWFLDVAGMKRSKRYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFG 237
Query: 242 CILIFAVPTILLVMNTVWFVKILRGLKKTLAKRQ 275
+L+ VP IL VMN +WF KILRGLKKTLAKR
Sbjct: 238 YLLVCVVPAILFVMNMIWFSKILRGLKKTLAKRH 271
>Os03g0666700 Protein of unknown function DUF887, TLC-like family protein
Length = 266
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 163/264 (61%), Positives = 203/264 (76%)
Query: 10 VAAKAYKYRAESLVKDYLLADCYVSYTAVLGGILMCKMVYDITHLISSLYYKGYGSLTKI 69
+A YKY+A+ L++DYLLAD V YT+VL GI +CKM YD+T ++SS Y+KGY SLTKI
Sbjct: 1 MAMTGYKYQAQELMRDYLLADPLVPYTSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKI 60
Query: 70 QKLEWNNRGMSTVHAMFITLMSVYLVFFSNLFSDELDGPVTVRSSNLSNFTLGVSLGYFI 129
Q++EWNNRGMS+ HA+FIT +S+YLV ++LFSD L GP+T R+S +S F LGVS+GYFI
Sbjct: 61 QRVEWNNRGMSSAHAIFITAISLYLVMSTDLFSDRLKGPITFRNSIISTFALGVSVGYFI 120
Query: 130 ADLAMLSWAYPSLGGMEYVLHHLLSIISLVYAIYSEEGQLYTYMVLISETTTPGINLRWF 189
ADLAM+ W YPSLGGMEY++HH LS++++ Y + S EGQ YTYMVLISETTTP INLRWF
Sbjct: 121 ADLAMIFWLYPSLGGMEYIVHHTLSLVAIAYTMLSGEGQFYTYMVLISETTTPEINLRWF 180
Query: 190 LDTVGMKRSKAYLVNGVTMFVAWLVARXXXXXXXXXXXXXXXDQVKQMRTFSCILIFAVP 249
LDT G+K+S AYLVNG+ MFVAWLVAR QV QM F L F VP
Sbjct: 181 LDTAGLKKSSAYLVNGILMFVAWLVARILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVP 240
Query: 250 TILLVMNTVWFVKILRGLKKTLAK 273
++L VMNT+WF+KIL+G+KKTL K
Sbjct: 241 SVLFVMNTMWFMKILKGVKKTLGK 264
>Os05g0485300 Protein of unknown function DUF887, TLC-like family protein
Length = 263
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 150/238 (63%), Gaps = 1/238 (0%)
Query: 36 TAVLGGILMCKMVYDITHLISSLYYKGYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLV 95
+VL GILMC VYDIT +SS YKGY L ++ KLEWNNRG ST HA+ ++S YL+
Sbjct: 15 ASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFSTFHALVAAVVSFYLL 74
Query: 96 FFSNLFSDELDGPVTV-RSSNLSNFTLGVSLGYFIADLAMLSWAYPSLGGMEYVLHHLLS 154
S+LFS ++ G + + R S +S+ GVSLGYF+ DL M+ W +PSLGG EY+LHH LS
Sbjct: 75 VISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFPSLGGKEYLLHHGLS 134
Query: 155 IISLVYAIYSEEGQLYTYMVLISETTTPGINLRWFLDTVGMKRSKAYLVNGVTMFVAWLV 214
+ ++ A+ S +G +Y MVLI+E TTP +NLRW+LD G K SK YL NGV +F WLV
Sbjct: 135 MYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKLYLYNGVALFAGWLV 194
Query: 215 ARXXXXXXXXXXXXXXXDQVKQMRTFSCILIFAVPTILLVMNTVWFVKILRGLKKTLA 272
AR DQV+ + + AVP + MN +WF KI +G+ K ++
Sbjct: 195 ARVILFVYFFAHVYLHFDQVRTVFPLGFYSMMAVPPAMSAMNLLWFRKICKGMVKAMS 252
>Os01g0817100 Protein of unknown function DUF887, TLC-like family protein
Length = 260
Score = 213 bits (543), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 148/240 (61%), Gaps = 3/240 (1%)
Query: 36 TAVLGGILMCKMVYDITHLISSLYYKGYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLV 95
+VL GI MC VYDIT +SS +KGY +++ ++K+EWNNRG ST HA+ ++S YLV
Sbjct: 15 ASVLAGIAMCAAVYDITQKVSSHCFKGYDNISPMKKVEWNNRGFSTFHALVAAVVSFYLV 74
Query: 96 FFSNLFSDELDGPVTVRSSNLSNFTLGVSLGYFIADLAMLSWAYPSLGGMEYVLHHLLSI 155
S+LF + + R+S LS+ GVS+GYF+ DL M+ W +PSLGG EY+LHH LS+
Sbjct: 75 VISDLFHSNI---IIDRNSWLSDAMFGVSIGYFLTDLVMILWYFPSLGGKEYLLHHGLSM 131
Query: 156 ISLVYAIYSEEGQLYTYMVLISETTTPGINLRWFLDTVGMKRSKAYLVNGVTMFVAWLVA 215
++ A+ S + +Y MVL +E TTP +NLRW+L+ G K YL NG+ +FV WLVA
Sbjct: 132 YAICLALLSGKAHMYILMVLFTEATTPFVNLRWYLEVAGKKTHNLYLYNGLALFVGWLVA 191
Query: 216 RXXXXXXXXXXXXXXXDQVKQMRTFSCILIFAVPTILLVMNTVWFVKILRGLKKTLAKRQ 275
R DQVK + I VP L VMN WF KI +G+ KTL+KR+
Sbjct: 192 RVILFIYFFTHMYFHFDQVKSIFPLGFYSILTVPPALAVMNLFWFWKIFKGMLKTLSKRR 251
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,317,802
Number of extensions: 246190
Number of successful extensions: 670
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 663
Number of HSP's successfully gapped: 5
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)