FiT-DB / Search/ Help/ Sample detail

Os05g0511000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF887, TLC-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.25 (0.018) R2 : 0.378
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.768 (0.0464) R2dC : 0.374 R2C : 0.375
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0532 (0.0379) R2dN8 : 0.00347 R2N8 : 0.00387
σ : 0.339
deviance : 52.61
__
_____
C
peak time of C : 4.44
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.28 0.305 7.21 -0.138 0.753 0.241 -0.579 1.89 0.0919 4.28 0.2737 5947 -- --
43.84 0.308 7.24 -0.165 0.758 0.569 -0.547 -- 0.102 4.28 0.4595 5173 -- --
43.04 0.306 7.2 -0.129 0.755 0.184 -- 2.02 0.0969 4.41 0.3258 6318 -- --
42.29 0.303 7.24 -0.238 0.761 0.634 -- -- 0.109 4.37 0.5048 17038 -- --
73.23 0.399 7.2 -0.0633 -- 0.0932 -- 2.43 0.102 -- 0.3671 5660 -- --
52.06 0.338 7.25 0.0269 0.767 -- -0.457 -- 0.0542 4.29 -- -- -- --
52.59 0.34 7.25 0.0315 0.767 -- -- -- 0.0567 4.44 -- -- -- --
74.05 0.401 7.24 -0.206 -- 0.655 -- -- 0.137 -- 0.7378 16834 -- --
43.56 0.307 7.23 -- 0.769 0.564 -- -- 0.131 4.44 0.7505 16900 -- --
84.14 0.429 7.25 0.0616 -- -- -- -- 0.077 -- -- -- -- --
52.61 0.339 7.25 -- 0.768 -- -- -- 0.0532 4.44 -- -- -- --
74.99 0.403 7.24 -- -- 0.581 -- -- 0.149 -- 0.7022 16710 -- --
84.24 0.428 7.25 -- -- -- -- -- 0.0701 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.95 radiation 1.0 720 < th dose dependent rect. 6 18
2 38.29 radiation 1.0 720 < th dose independent rect. 6 18
5 38.76 radiation 30.0 90 < th dose dependent rect. 5 4
7 38.82 radiation 20.0 270 < th dose dependent rect. 3 5
11 39.01 radiation 20.0 90 < th dose independent rect. 5 4
13 39.07 wind 1.0 270 > th dose independent rect. 3 4
14 39.21 precipitation 0.1 270 < th dose independent rect. 7 20
15 39.21 precipitation 0.1 270 < th dose dependent rect. 7 20
17 39.24 radiation 10.0 270 < th dose independent rect. 3 5
20 39.39 radiation 40.0 270 < th dose dependent rect. 13 19
23 39.42 temperature 10.0 270 > th dose dependent rect. 8 18
26 39.58 wind 1.0 270 > th dose independent rect. 2 6
52 39.89 humidity 70.0 270 > th dose independent rect. 3 4
54 39.91 wind 7.0 270 < th dose independent rect. 3 4
55 39.92 radiation 1.0 720 < th dose dependent rect. 15 9
56 39.92 radiation 1.0 720 < th dose dependent rect. 13 11
59 39.94 temperature 10.0 270 > th dose independent rect. 3 4
61 39.94 temperature 30.0 270 < th dose independent rect. 3 4
62 39.94 humidity 50.0 270 > th dose independent rect. 3 4
64 39.94 atmosphere 995.0 270 > th dose independent rect. 3 4
65 39.94 atmosphere 1015.0 270 < th dose independent rect. 3 4
68 39.94 temperature 10.0 270 > th dose independent rect. 7 20
76 39.99 radiation 1.0 720 < th dose dependent rect. 10 14
85 40.06 wind 1.0 270 > th dose independent rect. 8 19
88 40.08 atmosphere 1010.0 90 < th dose independent rect. 5 4
90 40.10 wind 9.0 270 < th dose independent rect. 7 20
98 40.16 humidity 60.0 90 > th dose dependent rect. 5 6
109 40.26 humidity 50.0 90 > th dose dependent rect. 5 4
115 40.34 precipitation 0.1 270 < th dose independent rect. 3 4
117 40.34 precipitation 0.1 270 < th dose dependent rect. 3 4
119 40.36 radiation 1.0 270 > th dose independent rect. 7 12
129 40.37 radiation 30.0 270 < th dose independent rect. 13 18
133 40.39 precipitation 0.1 270 < th dose independent rect. 6 23
134 40.39 precipitation 0.1 270 < th dose dependent rect. 6 23
138 40.41 radiation 40.0 270 < th dose independent rect. 12 20
150 40.51 humidity 70.0 90 > th dose independent rect. 5 4
156 40.55 temperature 30.0 90 < th dose independent rect. 5 4
159 40.56 wind 7.0 270 < th dose independent rect. 2 6
168 40.60 humidity 60.0 90 > th dose dependent rect. 5 14
170 40.61 humidity 50.0 270 > th dose independent rect. 14 17
175 40.62 temperature 10.0 270 > th dose independent rect. 2 6
177 40.62 temperature 30.0 270 < th dose independent rect. 2 6
178 40.62 humidity 50.0 270 > th dose independent rect. 2 6
180 40.62 atmosphere 995.0 270 > th dose independent rect. 2 6
181 40.62 atmosphere 1015.0 270 < th dose independent rect. 2 6
182 40.62 temperature 10.0 270 > th dose independent rect. 8 18
232 40.74 atmosphere 995.0 270 > th dose dependent rect. 3 4
233 40.74 temperature 10.0 270 > th dose dependent rect. 18 9
235 40.76 precipitation 0.1 90 < th dose independent rect. 5 4
236 40.76 precipitation 0.1 90 < th dose dependent rect. 5 4
254 40.84 temperature 30.0 270 < th dose dependent rect. 13 18
274 40.91 radiation 1.0 270 > th dose independent rect. 7 8
291 40.98 precipitation 0.1 270 < th dose independent rect. 2 6
292 40.98 precipitation 0.1 270 < th dose dependent rect. 2 6
298 41.00 radiation 10.0 270 < th dose dependent rect. 3 10
316 41.05 humidity 80.0 90 > th dose independent rect. 5 6
322 41.08 radiation 1.0 720 < th dose independent rect. 13 11
323 41.08 radiation 1.0 720 > th dose independent rect. 17 19
327 41.10 atmosphere 1010.0 270 < th dose independent rect. 5 1
329 41.10 radiation 1.0 720 < th dose independent rect. 10 14
331 41.10 wind 9.0 270 < th dose dependent rect. 3 4
332 41.10 precipitation 0.1 14400 > th dose dependent rect. 17 4
335 41.11 wind 5.0 270 < th dose independent rect. 5 1
336 41.11 humidity 70.0 270 > th dose independent rect. 15 16
337 41.11 humidity 50.0 270 > th dose dependent rect. 3 5
342 41.12 precipitation 0.1 14400 > th dose dependent rect. 17 7
348 41.15 radiation 1.0 270 < th dose independent rect. 4 14
356 41.16 temperature 10.0 270 > th dose independent rect. 5 1
358 41.16 temperature 30.0 270 < th dose independent rect. 5 1
359 41.16 humidity 50.0 270 > th dose independent rect. 5 1
362 41.16 atmosphere 995.0 270 > th dose independent rect. 5 1
368 41.16 temperature 10.0 270 > th dose independent rect. 6 23
369 41.16 temperature 30.0 90 < th dose dependent rect. 5 4
376 41.19 precipitation 0.1 14400 < th dose independent rect. 17 4
378 41.19 precipitation 0.1 14400 < th dose dependent rect. 17 4
384 41.20 precipitation 0.1 14400 > th dose dependent rect. 13 11
396 41.23 precipitation 0.1 270 < th dose independent rect. 5 1
397 41.23 precipitation 0.1 270 < th dose dependent rect. 5 1
406 41.25 precipitation 0.1 14400 > th dose independent rect. 17 4
407 41.25 temperature 30.0 270 < th dose independent rect. 15 16
408 41.25 wind 9.0 90 < th dose dependent rect. 5 4
476 41.38 precipitation 0.1 270 < th dose independent rect. 17 10
477 41.38 precipitation 0.1 270 < th dose dependent rect. 17 10
482 41.39 precipitation 0.1 14400 > th dose dependent rect. 13 5
486 41.40 precipitation 0.1 720 < th dose independent rect. 1 18
487 41.40 precipitation 0.1 14400 > th dose dependent sin 18 NA
488 41.40 precipitation 0.1 720 < th dose dependent rect. 1 18
513 41.45 precipitation 0.1 270 < th dose independent rect. 7 7
515 41.45 precipitation 0.1 270 < th dose dependent rect. 7 7
518 41.46 wind 1.0 270 > th dose independent rect. 7 7
519 41.46 precipitation 0.1 90 < th dose independent rect. 19 10
523 41.46 precipitation 0.1 90 < th dose dependent rect. 19 10
534 41.48 temperature 30.0 270 < th dose dependent rect. 3 4
554 41.51 wind 9.0 270 < th dose dependent rect. 5 1
563 41.54 wind 1.0 270 > th dose independent rect. 14 17
565 41.54 atmosphere 995.0 270 > th dose dependent rect. 5 1
569 41.55 temperature 10.0 270 > th dose independent rect. 7 7
570 41.55 atmosphere 995.0 270 > th dose independent rect. 7 7
571 41.55 atmosphere 1015.0 270 < th dose independent rect. 7 7
574 41.55 temperature 10.0 270 > th dose independent rect. 14 17
583 41.55 humidity 50.0 270 > th dose dependent rect. 14 18
609 41.59 humidity 50.0 270 > th dose independent rect. 7 7
610 41.59 wind 9.0 270 < th dose independent rect. 14 17
615 41.60 atmosphere 995.0 270 > th dose independent rect. 14 17
617 41.60 temperature 10.0 270 > th dose dependent rect. 4 3
620 41.61 precipitation 0.1 14400 > th dose independent rect. 17 2
621 41.61 precipitation 0.1 14400 < th dose independent rect. 17 2
628 41.61 precipitation 0.1 14400 < th dose dependent rect. 17 2
678 41.68 wind 9.0 270 < th dose independent rect. 7 7
689 41.69 radiation 1.0 270 > th dose independent sin 1 NA
776 41.77 wind 9.0 270 < th dose independent rect. 6 23
806 41.80 humidity 70.0 90 > th dose independent rect. 5 13
834 41.83 precipitation 0.1 270 < th dose independent rect. 22 14
840 41.83 precipitation 0.1 270 < th dose dependent rect. 22 14
844 41.84 temperature 10.0 270 > th dose dependent rect. 5 1
847 41.85 precipitation 0.1 14400 > th dose independent rect. 13 5
861 41.87 precipitation 0.1 14400 < th dose independent rect. 13 5
870 41.87 precipitation 0.1 14400 < th dose dependent rect. 13 5
882 41.89 atmosphere 995.0 270 > th dose independent rect. 7 20
944 41.97 precipitation 0.1 14400 < th dose independent sin 19 NA
951 41.97 precipitation 0.1 14400 < th dose dependent sin 19 NA
957 41.98 precipitation 0.1 14400 > th dose independent sin 19 NA
983 41.99 wind 1.0 43200 < th dose dependent rect. 12 17