BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0511000 Os05g0511000|AK067012
(271 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19645.1 | chr4:10689941-10691298 REVERSE LENGTH=269 348 2e-96
AT1G31300.1 | chr1:11194308-11195955 FORWARD LENGTH=279 342 1e-94
AT4G10360.1 | chr4:6420679-6422108 FORWARD LENGTH=267 246 8e-66
>AT4G19645.1 | chr4:10689941-10691298 REVERSE LENGTH=269
Length = 268
Score = 348 bits (892), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 165/258 (63%), Positives = 201/258 (77%), Gaps = 2/258 (0%)
Query: 16 ELLVKDYLLADSYVPYASVLGGILMCKLSYDFTRFISSFYFKGYGSLTKMQKVEWNNRGM 75
E V+ YLLAD ++PY SVL GI +CKL YD T SS + K Y +LTK++++EWNNRG+
Sbjct: 11 EYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKIKRIEWNNRGI 70
Query: 76 STVHAIFITLMSAYLVFFSGLFSDQQ--DGPVTFRSSSLSNFTLGVSVGYFIADLAMILW 133
STVHAIFI+ M+ Y FFS LFSDQ+ + FR+S LS F LGVSVGYF+ADL MI W
Sbjct: 71 STVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGYFLADLGMIFW 130
Query: 134 FYPSLGGMEYLVHHVLSLTAVTYTMLSGEGQLYTYMSLISETTTPGINLRWFLDVAGMKR 193
YPSLGG EY++HH LS TAV Y++ SGE QLYTYM LISE TTP INLRW+LD+AG+KR
Sbjct: 131 LYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVTTPEINLRWYLDIAGLKR 190
Query: 194 SKRYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVPAILFVMNM 253
SK Y+VNGVA+F WL ARI+LF+Y+FY ++ HYDQ+ +M TFGYLLV VVP L VMN+
Sbjct: 191 SKAYLVNGVAIFFAWLTARILLFIYMFYHVYTHYDQVIEMHTFGYLLVFVVPISLSVMNL 250
Query: 254 IWFSKILRGLKKTLAKRH 271
IWF KI++GLKKTL KR
Sbjct: 251 IWFGKIVKGLKKTLEKRQ 268
>AT1G31300.1 | chr1:11194308-11195955 FORWARD LENGTH=279
Length = 278
Score = 342 bits (877), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/256 (64%), Positives = 205/256 (80%), Gaps = 1/256 (0%)
Query: 16 ELLVKDYLLADSYVPYASVLGGILMCKLSYDFTRFISSFYFKGYGSLTKMQKVEWNNRGM 75
+ LVK+YLLAD ++PY SVL GI +CK+ YD FIS+ + K Y LTK+Q++EWNNRG+
Sbjct: 20 QHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYIILTKIQRIEWNNRGI 79
Query: 76 STVHAIFITLMSAYLVFFSGLFSDQ-QDGPVTFRSSSLSNFTLGVSVGYFIADLAMILWF 134
STVHAIFI+ MS Y VF+S LFSD+ + V FRSS LS+ LG+S+GYF+ADL MI W
Sbjct: 80 STVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGISIGYFLADLGMIFWK 139
Query: 135 YPSLGGMEYLVHHVLSLTAVTYTMLSGEGQLYTYMSLISETTTPGINLRWFLDVAGMKRS 194
YPSLGG+EY+VHH LS AV Y++ SGEGQLYTYM LISE TTP INLRW+LD AGMK+S
Sbjct: 140 YPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPEINLRWYLDTAGMKKS 199
Query: 195 KRYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVPAILFVMNMI 254
YVVNGV +FL WLVARI+LF+Y+FY ++LHY+Q+ +M FGY+LV VPA L VMN+I
Sbjct: 200 LAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHIFGYVLVFGVPAALGVMNLI 259
Query: 255 WFSKILRGLKKTLAKR 270
WF KI+RG+KKTLAKR
Sbjct: 260 WFGKIVRGVKKTLAKR 275
>AT4G10360.1 | chr4:6420679-6422108 FORWARD LENGTH=267
Length = 266
Score = 246 bits (629), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 165/239 (69%), Gaps = 1/239 (0%)
Query: 32 ASVLGGILMCKLSYDFTRFISSFYFKGYGSLTKMQKVEWNNRGMSTVHAIFITLMSAYLV 91
AS+ G LMCK+ YD TRFIS F YG L ++EWNNRG ST HA+F ++ S Y +
Sbjct: 19 ASICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAVFTSVASIYFL 78
Query: 92 FFSGLFSDQQDGPVTFRSSS-LSNFTLGVSVGYFIADLAMILWFYPSLGGMEYLVHHVLS 150
S F + G S++ LS +G+S+GYF+ADLAMI W++P+LGG+EY+ HH LS
Sbjct: 79 VISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTLGGIEYVFHHFLS 138
Query: 151 LTAVTYTMLSGEGQLYTYMSLISETTTPGINLRWFLDVAGMKRSKRYVVNGVAMFLTWLV 210
+ A+ ++ SG+ Q Y ++ L+SE TTP +NLRW+LD +G K SK Y +NG+A+FL WLV
Sbjct: 139 MFAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYTLNGIALFLGWLV 198
Query: 211 ARIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVPAILFVMNMIWFSKILRGLKKTLAK 269
AR++LF++ F ++LH+ Q+KQ+ G+ + +P L VMN++WF KI +GL KTL+K
Sbjct: 199 ARVLLFIFFFVHMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLLWFWKITKGLIKTLSK 257
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.142 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,301,671
Number of extensions: 206397
Number of successful extensions: 595
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 3
Length of query: 271
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,447,217
Effective search space: 1469815758
Effective search space used: 1469815758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 111 (47.4 bits)