FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0485300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF887, TLC-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.04 (0.0482) R2 : 0.699
β1 : 3.71 (0.18) R2dD : 0.303 R2D : 0.177
β2 : 2.9 (0.125) R2dC : 0.364 R2C : 0.356
β3 : -1.23 (0.186) R2dE : 0.0317 R2E : 0.0248
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.05 (0.103) R2dN8 : 0.0925 R2N8 : 0.0184
σ : 0.901
deviance : 374.24
__
_____
C
peak time of C : 16.3
E
wheather : humidity
threshold : 77.27
memory length : 1272
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
369.57 0.903 6.05 3.66 2.89 -1.18 1.26 -0.443 1.03 16.3 76.08 1251 -- --
369.64 0.895 6.04 3.7 2.89 -1.21 1.28 -- 1.05 16.3 77.2 1269 -- --
373.81 0.9 6.05 3.68 2.9 -1.18 -- -0.518 1.04 16.3 76.2 1269 -- --
374.24 0.901 6.04 3.71 2.9 -1.23 -- -- 1.05 16.3 77.27 1272 -- --
691.75 1.23 6.01 3.41 -- 2.66 -- 1.81 1.05 -- 92.49 1220 -- --
403.43 0.942 6.03 3.47 3.02 -- 1.48 -- 1.11 16.2 -- -- -- --
409.59 0.948 6.02 3.49 3.03 -- -- -- 1.12 16.2 -- -- -- --
688.93 1.23 6.01 3.4 -- 2.87 -- -- 1.02 -- 115.3 1913 -- --
688.4 1.22 6.04 -- 2.91 -1.76 -- -- 1.07 16.3 93 7031 -- --
907.06 1.41 6.01 3.37 -- -- -- -- 1.04 -- -- -- -- --
730.45 1.26 6.11 -- 2.96 -- -- -- 0.73 16.2 -- -- -- --
932.92 1.42 6.1 -- -- 3.15 -- -- 0.65 -- 148.6 224 -- --
1206.11 1.62 6.09 -- -- -- -- -- 0.664 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 361.50 precipitation 0.1 270 < th dose independent rect. 1 21
2 361.50 precipitation 0.1 270 < th dose dependent rect. 1 21
3 362.11 wind 1.0 14400 < th dose independent rect. 1 2
4 362.61 humidity 50.0 14400 > th dose independent sin 13 NA
5 362.61 temperature 10.0 270 > th dose dependent rect. 22 3
6 362.69 precipitation 0.1 270 < th dose independent rect. 2 19
7 362.69 precipitation 0.1 270 < th dose dependent rect. 2 19
8 363.25 humidity 60.0 14400 < th dose dependent rect. 15 20
9 363.30 precipitation 0.1 14400 < th dose independent rect. 14 4
10 363.30 precipitation 0.1 14400 < th dose dependent rect. 14 4
11 363.55 precipitation 0.1 14400 > th dose dependent rect. 14 4
12 363.58 humidity 50.0 14400 > th dose independent rect. 14 13
15 363.59 humidity 50.0 14400 > th dose independent rect. 14 5
20 363.65 humidity 50.0 14400 > th dose independent rect. 14 10
22 363.65 precipitation 0.1 270 < th dose independent rect. 16 14
23 363.65 precipitation 0.1 270 < th dose dependent rect. 16 14
24 363.66 precipitation 0.1 14400 > th dose independent rect. 14 4
31 363.81 temperature 10.0 30 > th dose dependent rect. 22 6
35 363.92 humidity 50.0 14400 > th dose independent rect. 15 21
36 364.04 humidity 50.0 14400 < th dose independent sin 13 NA
41 364.15 humidity 60.0 14400 > th dose independent rect. 16 19
51 364.41 wind 1.0 14400 > th dose independent rect. 1 2
52 364.42 temperature 10.0 270 > th dose dependent rect. 21 5
54 364.52 atmosphere 1000.0 270 > th dose independent rect. 22 3
55 364.53 atmosphere 1000.0 270 > th dose independent rect. 21 5
56 364.53 humidity 60.0 14400 < th dose dependent sin 11 NA
63 364.59 precipitation 0.1 14400 > th dose dependent rect. 10 9
73 364.70 humidity 60.0 14400 < th dose independent sin 10 NA
74 364.71 humidity 60.0 14400 < th dose independent rect. 17 19
75 364.71 humidity 50.0 14400 < th dose independent rect. 15 21
78 364.84 humidity 60.0 14400 > th dose independent sin 10 NA
86 364.91 humidity 50.0 270 > th dose dependent rect. 22 3
95 365.09 atmosphere 1000.0 30 > th dose independent rect. 22 6
120 365.45 atmosphere 1015.0 270 < th dose independent rect. 22 3
123 365.47 humidity 70.0 1440 < th dose dependent rect. 15 1
135 365.58 precipitation 0.1 14400 > th dose dependent rect. 7 20
137 365.60 temperature 10.0 270 > th dose dependent rect. 23 1
140 365.68 precipitation 0.1 14400 > th dose dependent rect. 14 13
142 365.76 wind 1.0 270 > th dose independent rect. 21 5
148 365.85 precipitation 0.1 14400 > th dose dependent sin 21 NA
167 365.97 humidity 50.0 14400 < th dose independent rect. 14 4
196 366.11 humidity 60.0 14400 < th dose dependent sin 14 NA
210 366.20 wind 9.0 270 < th dose independent rect. 22 3
211 366.20 temperature 10.0 270 > th dose independent rect. 22 3
212 366.20 temperature 30.0 270 < th dose independent rect. 22 3
213 366.20 humidity 50.0 270 > th dose independent rect. 22 3
217 366.20 radiation 1.0 270 < th dose independent rect. 22 3
222 366.20 temperature 10.0 270 > th dose independent rect. 1 21
224 366.20 radiation 1.0 270 < th dose dependent rect. 22 3
229 366.20 precipitation 0.1 14400 > th dose dependent rect. 12 15
235 366.27 precipitation 0.1 270 < th dose independent rect. 22 3
237 366.27 precipitation 0.1 270 < th dose dependent rect. 22 3
242 366.29 humidity 60.0 14400 < th dose dependent rect. 14 6
257 366.34 humidity 70.0 14400 < th dose dependent rect. 18 17
258 366.34 precipitation 0.1 14400 > th dose dependent rect. 20 23
280 366.48 precipitation 0.1 14400 > th dose dependent rect. 21 21
285 366.52 precipitation 0.1 14400 > th dose dependent rect. 24 19
297 366.58 precipitation 0.1 270 < th dose independent rect. 24 23
298 366.58 precipitation 0.1 270 < th dose dependent rect. 24 23
304 366.62 humidity 50.0 270 > th dose dependent rect. 21 5
310 366.66 radiation 1.0 43200 < th dose dependent rect. 19 5
315 366.68 temperature 10.0 270 > th dose independent rect. 21 5
316 366.68 temperature 30.0 270 < th dose independent rect. 21 5
317 366.68 humidity 50.0 270 > th dose independent rect. 21 5
321 366.68 radiation 1.0 270 < th dose independent rect. 21 5
326 366.68 temperature 10.0 270 > th dose independent rect. 2 19
328 366.68 radiation 1.0 270 < th dose dependent rect. 21 5
336 366.70 temperature 20.0 90 > th dose independent rect. 22 5
337 366.71 humidity 50.0 30 > th dose dependent rect. 22 6
341 366.74 wind 9.0 270 < th dose independent rect. 21 5
352 366.81 precipitation 0.1 270 < th dose independent rect. 21 5
353 366.81 precipitation 0.1 270 < th dose dependent rect. 21 5
360 366.87 atmosphere 1015.0 270 < th dose independent rect. 21 5
382 367.01 humidity 60.0 1440 > th dose independent rect. 14 2
390 367.06 atmosphere 1015.0 30 < th dose independent rect. 22 6
398 367.10 precipitation 0.1 14400 > th dose dependent rect. 24 22
429 367.28 wind 9.0 30 < th dose dependent rect. 22 6
430 367.28 precipitation 0.1 14400 > th dose dependent rect. 14 23
464 367.50 precipitation 0.1 14400 > th dose dependent rect. 14 19
473 367.54 humidity 60.0 1440 < th dose independent rect. 14 2
498 367.66 precipitation 0.1 14400 > th dose independent sin 21 NA
505 367.67 precipitation 0.1 14400 < th dose independent sin 21 NA
507 367.67 precipitation 0.1 14400 < th dose dependent sin 21 NA
512 367.70 radiation 1.0 10 < th dose dependent rect. 22 19
532 367.72 precipitation 0.1 30 < th dose independent rect. 4 18
533 367.72 precipitation 0.1 30 < th dose dependent rect. 4 18
535 367.73 wind 9.0 270 < th dose independent rect. 6 10
551 367.77 precipitation 0.1 14400 > th dose dependent rect. 10 23
560 367.81 precipitation 0.1 14400 > th dose dependent no NA NA
647 368.11 temperature 10.0 30 > th dose independent rect. 22 6
648 368.11 temperature 30.0 30 < th dose independent rect. 22 6
649 368.11 humidity 50.0 30 > th dose independent rect. 22 6
653 368.11 radiation 1.0 30 < th dose independent rect. 22 6
658 368.11 temperature 10.0 30 > th dose independent rect. 4 18
660 368.11 atmosphere 1015.0 30 < th dose independent rect. 4 18
661 368.11 radiation 1.0 30 < th dose dependent rect. 22 6
672 368.15 wind 9.0 30 < th dose independent rect. 22 6
695 368.26 atmosphere 1015.0 270 < th dose independent rect. 2 19
696 368.27 humidity 60.0 14400 > th dose independent rect. 10 1
704 368.30 wind 1.0 270 > th dose independent rect. 22 3
705 368.30 humidity 60.0 14400 > th dose independent rect. 9 3
706 368.30 wind 5.0 30 < th dose independent rect. 22 6
726 368.41 humidity 60.0 14400 > th dose independent rect. 2 10
731 368.42 humidity 60.0 14400 > th dose independent rect. 7 5
735 368.42 wind 9.0 270 < th dose independent rect. 1 21
744 368.44 wind 9.0 270 < th dose independent rect. 2 19
757 368.45 humidity 60.0 14400 < th dose dependent rect. 10 22
772 368.47 humidity 60.0 14400 < th dose dependent rect. 10 10
833 368.58 precipitation 0.1 270 < th dose independent rect. 1 10
836 368.58 precipitation 0.1 270 < th dose dependent rect. 1 10
898 368.66 wind 9.0 90 < th dose dependent rect. 23 4
901 368.68 humidity 70.0 14400 < th dose dependent rect. 9 2
903 368.69 humidity 60.0 14400 < th dose dependent no NA NA
906 368.69 humidity 60.0 14400 < th dose dependent rect. 6 16
944 368.70 humidity 60.0 14400 < th dose dependent rect. 7 13