BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0485300 Os05g0485300|AK102064
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0485300 Protein of unknown function DUF887, TLC-like f... 512 e-145
Os01g0817100 Protein of unknown function DUF887, TLC-like f... 384 e-107
Os05g0511000 Protein of unknown function DUF887, TLC-like f... 241 5e-64
Os03g0666700 Protein of unknown function DUF887, TLC-like f... 237 6e-63
Os01g0768200 Protein of unknown function DUF887, TLC-like f... 236 1e-62
>Os05g0485300 Protein of unknown function DUF887, TLC-like family protein
Length = 263
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/263 (95%), Positives = 251/263 (95%)
Query: 1 MDVRFGPEEQIVWPASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFST 60
MDVRFGPEEQIVWPASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFST
Sbjct: 1 MDVRFGPEEQIVWPASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFST 60
Query: 61 FHALVAAVVSFYLLVISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFP 120
FHALVAAVVSFYLLVISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFP
Sbjct: 61 FHALVAAVVSFYLLVISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFP 120
Query: 121 SLGGKEYLLHHGLSMYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKL 180
SLGGKEYLLHHGLSMYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKL
Sbjct: 121 SLGGKEYLLHHGLSMYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKL 180
Query: 181 YLYNGVALFAGWLVARVILFVYFFAHVYLHFDQVRTVFPLGFYXXXXXXXXXXXXNLLWF 240
YLYNGVALFAGWLVARVILFVYFFAHVYLHFDQVRTVFPLGFY NLLWF
Sbjct: 181 YLYNGVALFAGWLVARVILFVYFFAHVYLHFDQVRTVFPLGFYSMMAVPPAMSAMNLLWF 240
Query: 241 RKICKGMVKAMSSANRSQCVKTD 263
RKICKGMVKAMSSANRSQCVKTD
Sbjct: 241 RKICKGMVKAMSSANRSQCVKTD 263
>Os01g0817100 Protein of unknown function DUF887, TLC-like family protein
Length = 260
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/258 (71%), Positives = 213/258 (82%), Gaps = 4/258 (1%)
Query: 1 MDVRFGPEEQIVWPASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFST 60
MD FG EE+I+WPASVLAGI MCAAVYDIT++VSS C+KGY+ ++ + K+EWNNRGFST
Sbjct: 1 MDGNFGSEERILWPASVLAGIAMCAAVYDITQKVSSHCFKGYDNISPMKKVEWNNRGFST 60
Query: 61 FHALVAAVVSFYLLVISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFP 120
FHALVAAVVSFYL+VISDLF H IIIDR SW+SDAMFGVS+GYFLTDL+MILW+FP
Sbjct: 61 FHALVAAVVSFYLVVISDLF----HSNIIIDRNSWLSDAMFGVSIGYFLTDLVMILWYFP 116
Query: 121 SLGGKEYLLHHGLSMYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKL 180
SLGGKEYLLHHGLSMYAI LALLSGK H+YILMVL TEATTPFVNLRWYL++AG+K L
Sbjct: 117 SLGGKEYLLHHGLSMYAICLALLSGKAHMYILMVLFTEATTPFVNLRWYLEVAGKKTHNL 176
Query: 181 YLYNGVALFAGWLVARVILFVYFFAHVYLHFDQVRTVFPLGFYXXXXXXXXXXXXNLLWF 240
YLYNG+ALF GWLVARVILF+YFF H+Y HFDQV+++FPLGFY NL WF
Sbjct: 177 YLYNGLALFVGWLVARVILFIYFFTHMYFHFDQVKSIFPLGFYSILTVPPALAVMNLFWF 236
Query: 241 RKICKGMVKAMSSANRSQ 258
KI KGM+K +S +
Sbjct: 237 WKIFKGMLKTLSKRRQQS 254
>Os05g0511000 Protein of unknown function DUF887, TLC-like family protein
Length = 271
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 1/238 (0%)
Query: 15 ASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFSTFHALVAAVVSFYLL 74
ASVL GILMC YD TR +SS +KGY L ++ K+EWNNRG ST HA+ ++S YL+
Sbjct: 32 ASVLGGILMCKLSYDFTRFISSFYFKGYGSLTKMQKVEWNNRGMSTVHAIFITLMSAYLV 91
Query: 75 VISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFPSLGGKEYLLHHGLS 134
S LFS G + R S +S+ GVS+GYF+ DL MILW +PSLGG EYL+HH LS
Sbjct: 92 FFSGLFSDQQDGPVTF-RSSSLSNFTLGVSVGYFIADLAMILWFYPSLGGMEYLVHHVLS 150
Query: 135 MYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKLYLYNGVALFAGWLV 194
+ A++ +LSG+G +Y M LI+E TTP +NLRW+LD+AG K SK Y+ NGVA+F WLV
Sbjct: 151 LTAVTYTMLSGEGQLYTYMSLISETTTPGINLRWFLDVAGMKRSKRYVVNGVAMFLTWLV 210
Query: 195 ARVILFVYFFAHVYLHFDQVRTVFPLGFYXXXXXXXXXXXXNLLWFRKICKGMVKAMS 252
AR+ILF+Y F ++LH+DQ++ + G+ N++WF KI +G+ K ++
Sbjct: 211 ARIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVPAILFVMNMIWFSKILRGLKKTLA 268
>Os03g0666700 Protein of unknown function DUF887, TLC-like family protein
Length = 266
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 158/243 (65%), Gaps = 1/243 (0%)
Query: 9 EQIVWPASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFSTFHALVAAV 68
+ +V SVL GI +C YD+TR +SS +KGY+ L ++ ++EWNNRG S+ HA+
Sbjct: 21 DPLVPYTSVLVGIALCKMAYDLTRVLSSFYFKGYSSLTKIQRVEWNNRGMSSAHAIFITA 80
Query: 69 VSFYLLVISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFPSLGGKEYL 128
+S YL++ +DLFS + G I R S +S GVS+GYF+ DL MI W +PSLGG EY+
Sbjct: 81 ISLYLVMSTDLFSDRLKGPITF-RNSIISTFALGVSVGYFIADLAMIFWLYPSLGGMEYI 139
Query: 129 LHHGLSMYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKLYLYNGVAL 188
+HH LS+ AI+ +LSG+G Y MVLI+E TTP +NLRW+LD AG K S YL NG+ +
Sbjct: 140 VHHTLSLVAIAYTMLSGEGQFYTYMVLISETTTPEINLRWFLDTAGLKKSSAYLVNGILM 199
Query: 189 FAGWLVARVILFVYFFAHVYLHFDQVRTVFPLGFYXXXXXXXXXXXXNLLWFRKICKGMV 248
F WLVAR++LF+Y F H+YLH+ QV + G+Y N +WF KI KG+
Sbjct: 200 FVAWLVARILLFIYVFYHIYLHYSQVMQMHAFGYYLTFIVPSVLFVMNTMWFMKILKGVK 259
Query: 249 KAM 251
K +
Sbjct: 260 KTL 262
>Os01g0768200 Protein of unknown function DUF887, TLC-like family protein
Length = 275
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 15 ASVLAGILMCAAVYDITREVSSRCYKGYNGLNELHKLEWNNRGFSTFHALVAAVVSFYLL 74
+VL GILMC VYDIT +SS YKGY L ++ KLEWNNRG ST HA+ ++S YL+
Sbjct: 36 TAVLGGILMCKMVYDITHLISSLYYKGYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLV 95
Query: 75 VISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTDLLMILWHFPSLGGKEYLLHHGLS 134
S+LFS ++ G + + R S +S+ GVSLGYF+ DL M+ W +PSLGG EY+LHH LS
Sbjct: 96 FFSNLFSDELDGPVTV-RSSNLSNFTLGVSLGYFIADLAMLSWAYPSLGGMEYVLHHLLS 154
Query: 135 MYAISLALLSGKGHVYILMVLITEATTPFVNLRWYLDLAGRKDSKLYLYNGVALFAGWLV 194
+ ++ A+ S +G +Y MVLI+E TTP +NLRW+LD G K SK YL NGV +F WLV
Sbjct: 155 IISLVYAIYSEEGQLYTYMVLISETTTPGINLRWFLDTVGMKRSKAYLVNGVTMFVAWLV 214
Query: 195 ARVILFVYFFAHVYLHFDQVRTVFPLGFYXXXXXXXXXXXXNLLWFRKICKGMVKAMS 252
AR+ILF+Y F H+Y H DQV+ + N +WF KI +G+ K ++
Sbjct: 215 ARIILFIYLFYHIYFHIDQVKQMRTFSCILIFAVPTILLVMNTVWFVKILRGLKKTLA 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.142 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,149,229
Number of extensions: 301612
Number of successful extensions: 638
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 5
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)