BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0510400 Os05g0510400|AK068685
(412 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0510400 Cyclin-like F-box domain containing protein 627 e-180
Os01g0770400 Cyclin-like F-box domain containing protein 460 e-130
Os05g0490300 Cyclin-like F-box domain containing protein 304 8e-83
Os01g0812200 Cyclin-like F-box domain containing protein 296 2e-80
Os03g0321300 Cyclin-like F-box domain containing protein 229 2e-60
>Os05g0510400 Cyclin-like F-box domain containing protein
Length = 412
Score = 627 bits (1617), Expect = e-180, Method: Compositional matrix adjust.
Identities = 335/412 (81%), Positives = 335/412 (81%)
Query: 1 MAEDPAGSRRWRCDAGDEHGCWLSSSAGGGGDDHFDRLPDPLLLVIFNRIGDVKALGRCS 60
MAEDPAGSRRWRCDAGDEHGCWLSSSAGGGGDDHFDRLPDPLLLVIFNRIGDVKALGRCS
Sbjct: 1 MAEDPAGSRRWRCDAGDEHGCWLSSSAGGGGDDHFDRLPDPLLLVIFNRIGDVKALGRCS 60
Query: 61 LVSRRFHDLVPLVDSVLVRVDCVIPDDXXXXXXXXXXXXXXXXXXXXXXXXXXVFSQIAR 120
LVSRRFHDLVPLVDSVLVRVDCVIPDD VFSQIAR
Sbjct: 61 LVSRRFHDLVPLVDSVLVRVDCVIPDDPASSSSSSSSPSAAPSSPTASARARTVFSQIAR 120
Query: 121 IVLGGIVKPIQALGQILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVSHHSPSEVL 180
IVLGGIVKPIQALGQIL GDVSHHSPSEVL
Sbjct: 121 IVLGGIVKPIQALGQILSPANSASVLAASVTSSPSSSSSSSSSSPPLPGDVSHHSPSEVL 180
Query: 181 RSFKELRRLRIELPAGELSMEEGVLLKWKADFGSTLGSCVILXXXXXXXXXXXXXXXXXX 240
RSFKELRRLRIELPAGELSMEEGVLLKWKADFGSTLGSCVIL
Sbjct: 181 RSFKELRRLRIELPAGELSMEEGVLLKWKADFGSTLGSCVILGASSAGKDGGAGAAPAVD 240
Query: 241 XXESDETGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIADHTTLESLDLTDAD 300
ESDETGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIADHTTLESLDLTDAD
Sbjct: 241 CGESDETGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIADHTTLESLDLTDAD 300
Query: 301 GQGVLTMDKWQLQELRVKPVSASGGSHRTLMPALSMRLWYAPHIELPGGLVLNGATLVAI 360
GQGVLTMDKWQLQELRVKPVSASGGSHRTLMPALSMRLWYAPHIELPGGLVLNGATLVAI
Sbjct: 301 GQGVLTMDKWQLQELRVKPVSASGGSHRTLMPALSMRLWYAPHIELPGGLVLNGATLVAI 360
Query: 361 KPTEEATRDTVGSGIAGSAGGCWVSDAFEEPYRTAVGMLLKRRTYSLEMNSF 412
KPTEEATRDTVGSGIAGSAGGCWVSDAFEEPYRTAVGMLLKRRTYSLEMNSF
Sbjct: 361 KPTEEATRDTVGSGIAGSAGGCWVSDAFEEPYRTAVGMLLKRRTYSLEMNSF 412
>Os01g0770400 Cyclin-like F-box domain containing protein
Length = 396
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/392 (63%), Positives = 269/392 (68%), Gaps = 21/392 (5%)
Query: 33 DHFDRLPDPLLLVIFNRIGDVKALGRCSLVSRRFHDLVPLVDSVLVRVDCVIPDDXXXXX 92
D F+RLPD +LL +F RIGDVKALGRC+LVSRRFH LVPLVDSV VRVDCVI DD
Sbjct: 14 DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVISDDPPPSS 73
Query: 93 XXXXXXXXXXXXXXXXXXXXXVFSQIARIVLGGIVKPIQALGQILXXXXXXXXXXXXXXX 152
+ +AR+VLGGIV+PIQALGQIL
Sbjct: 74 AGSAQAAAAAEGGPPAARGRGALAHLARLVLGGIVRPIQALGQILSPAAATVSRRSAAPP 133
Query: 153 XXXXXXXXXXXXXXXXGDVSHHSPSEVLRSFKELRRLRIELPAGELSMEEGVLLKWKADF 212
DVSHHSPSEVLRSFKELRRL IELP GEL +E+GVLLKWKADF
Sbjct: 134 AAPAPAAA---------DVSHHSPSEVLRSFKELRRLHIELPTGELGIEDGVLLKWKADF 184
Query: 213 GSTLGSCVILXXXXXXXXXXXXXXXXXXXX------------ESDETGSIPESFYTNGGL 260
GSTLGSCVIL E DE G+IPES YTNGGL
Sbjct: 185 GSTLGSCVILGASSVTSKPPPPPAAPPPTAADSSAASPDSSREPDELGNIPESLYTNGGL 244
Query: 261 KLRVVWTISSLIAASARHYLLQPIIADHTTLESLDLTDADGQGVLTMDKWQLQELRVKPV 320
KLRVVWTISSLIAASARHYLLQPIIADH+TLESLDLTDADGQGVLTMDK QLQELRV+PV
Sbjct: 245 KLRVVWTISSLIAASARHYLLQPIIADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPV 304
Query: 321 SASGGSHRTLMPALSMRLWYAPHIELPGGLVLNGATLVAIKPTEEATRDTVGSGIAGSAG 380
SASG SHRTLMPALSMRLWYAPHIELPGG +L GATLVAI+P+E+ R+ G +AG G
Sbjct: 305 SASGNSHRTLMPALSMRLWYAPHIELPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTG 364
Query: 381 GCWVSDAFEEPYRTAVGMLLKRRTYSLEMNSF 412
W+ DAFEEPYRTA +LLKRRTYSLEMNSF
Sbjct: 365 ASWILDAFEEPYRTAAQVLLKRRTYSLEMNSF 396
>Os05g0490300 Cyclin-like F-box domain containing protein
Length = 450
Score = 304 bits (779), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 172/380 (45%), Positives = 224/380 (58%), Gaps = 41/380 (10%)
Query: 33 DHFDRLPDPLLLVIFNRIGDVKALGRCSLVSRRFHDLVPLVDSVLVRVDCVIPDDXXXXX 92
D FDRLPD L+LVI N + DV++LGRCS VS+RF+ LVPLV V V++D V+ D
Sbjct: 112 DQFDRLPDSLVLVILNNVEDVRSLGRCSAVSKRFYGLVPLVHDVYVKIDRVVTVDGEAED 171
Query: 93 XXXXXXXXXXXXXXXXXXXXXVFSQIARIVLGGIVKPIQALGQILXXXXXXXXXXXXXXX 152
+ S +++L I+KP ++
Sbjct: 172 ALNLSSPKPRN----------ILSHFLKMMLFTIIKPFHSM------------------- 202
Query: 153 XXXXXXXXXXXXXXXXGDVSHHSPSEVLRSFKELRRLRIELPAGELSMEEGVLLKWKADF 212
++ HSP++VLR+F +R LR+ELP+G++ EEGVLLKW+A++
Sbjct: 203 -----RGPNGAGRPLFPQLAQHSPAQVLRNFTHIRNLRVELPSGDVGTEEGVLLKWRAEY 257
Query: 213 GSTLGSCVILXXXXXXXXXXXXXXXXXXXXESDETGSIPESFYTNGGLKLRVVWTISSLI 272
GSTL +CVIL S++ GS+PESFYTNGGLKLRVVWTISSLI
Sbjct: 258 GSTLQNCVILGGTQVDRKPVGAEHELY----SEDNGSMPESFYTNGGLKLRVVWTISSLI 313
Query: 273 AASARHYLLQPIIADHTTLESLDLTDADGQGVLTMDKWQLQELRVKPVSASGGSHRTLMP 332
AAS RHYLL+ II DH TL SL LTDADGQG L+M QL+E R +SAS S+RT +P
Sbjct: 314 AASTRHYLLRSIIKDHPTLTSLVLTDADGQGTLSMGAEQLKEFRENQLSASACSNRTQVP 373
Query: 333 ALSMRLWYAPHIELPGGLVLNGATLVAIKPTEEATRDTVGSGIAGSAGGCWVSDAFEEPY 392
A +M+L YAP++ELPGG+ L GATLVAIKP+ E + G + +VS AF+ P+
Sbjct: 374 ACNMKLKYAPYLELPGGIALQGATLVAIKPSPEGSN---GGHTSRKETDAFVSGAFDGPF 430
Query: 393 RTAVGMLLKRRTYSLEMNSF 412
+ AV L+KRRTY LEMN F
Sbjct: 431 KFAVKALMKRRTYLLEMNGF 450
>Os01g0812200 Cyclin-like F-box domain containing protein
Length = 353
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 171/382 (44%), Positives = 222/382 (58%), Gaps = 46/382 (12%)
Query: 33 DHFDRLPDPLLLVIFNRIGDVKALGRCSLVSRRFHDLVPLVDSVLVRVDCVIPDDXXXXX 92
D FD LPDP++L+I N++ DV++LGRC+ VS+RF LVPLV V V++D V+ D
Sbjct: 16 DQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVPLVSDVYVKIDRVVATDGDADD 75
Query: 93 XXXXXXXXXXXXXXXXXXXXXVFSQIARIVLGGIVKPIQALGQILXXXXXXXXXXXXXXX 152
+FS +++L IVKP ++ +
Sbjct: 76 ALNLSSAKPKN----------IFSHFFKLMLFTIVKPFHSMRNL---------------- 109
Query: 153 XXXXXXXXXXXXXXXXGDVSHHSPSEVLRSFKELRRLRIELPAGELSMEEGVLLKWKADF 212
++ HSP VLR+F ++ LR+ELP+G++ EEGVLLKW+A++
Sbjct: 110 ---------NGTGRPLFPLAQHSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAEY 160
Query: 213 GSTLGSCVILXXXXXXXXXXXXXXXXXXXXESDETGSIPESFYTNGGLKLRVVWTISSLI 272
GSTL +CVIL ++ GS+PESFYTNGGLKLRVVWTISSLI
Sbjct: 161 GSTLRNCVILGGTLVDRKPIGAEHESSV----EDNGSMPESFYTNGGLKLRVVWTISSLI 216
Query: 273 AASARHYLLQPIIADHTTLESLDLTDADGQGVLTMDKWQLQELRVKPVSASGGSHRTLMP 332
AAS RHYLL+ II DH TL SL L DADGQG L M QL+E R +SAS S+RT +P
Sbjct: 217 AASTRHYLLRSIIKDHPTLRSLVLADADGQGTLYMGMEQLREFRENKLSASACSNRTQVP 276
Query: 333 ALSMRLWYAPHIELPGGLVLNGATLVAIKPTEEATRDTVGSGIAGS--AGGCWVSDAFEE 390
A +M+L YAP++ELPGG+ L GATLV IKP+ + GSG S +VS AF+E
Sbjct: 277 ACNMKLKYAPYLELPGGMTLQGATLVVIKPSNDG-----GSGGHSSRKETEAFVSSAFDE 331
Query: 391 PYRTAVGMLLKRRTYSLEMNSF 412
P+R AV L+KRRTY LEMN F
Sbjct: 332 PFRFAVKALMKRRTYLLEMNGF 353
>Os03g0321300 Cyclin-like F-box domain containing protein
Length = 384
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 162/248 (65%), Gaps = 11/248 (4%)
Query: 172 SHHSPSEVLRSFKELRRLRIELPAGELSMEEGVLLKWKADFGSTLGSCVIL-------XX 224
HHSP++VL++F +R LR+ELP ++ ++GVLL+WKA FGSTL SCVIL
Sbjct: 141 QHHSPAQVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKAVFGSTLQSCVILGGTRVDRAA 200
Query: 225 XXXXXXXXXXXXXXXXXXESDETGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPI 284
+ D+TGSIPESFYTNGGLKLRVVWTISSLIAA+ RHYLL+ I
Sbjct: 201 APAAAAATATAAGDSEASQGDDTGSIPESFYTNGGLKLRVVWTISSLIAAATRHYLLREI 260
Query: 285 IADHTTLESLDLTDADGQGVLTMDKWQLQELRVKPVSASGGSHRTLMPALSMRLWYAPHI 344
+ +H TLE + LTDA GQG L+M + Q++E R KP++A+ ++RT +PA +M+L YAP +
Sbjct: 261 VKEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAAAAANRTQVPACNMKLRYAPML 320
Query: 345 ELPGGLVLNGATLVAIKPTEEATRDTVGSGIAGSAGGCWVSDAFEEPYRTAVGMLLKRRT 404
EL G + GATLV IKP EA G +V+DAF+ PYR AV L KRRT
Sbjct: 321 ELSDGTRIQGATLVVIKPVGEAGGIGGGRKELDE----FVADAFDGPYREAVSALSKRRT 376
Query: 405 YSLEMNSF 412
Y LEMN F
Sbjct: 377 YLLEMNGF 384
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 45/54 (83%)
Query: 31 GDDHFDRLPDPLLLVIFNRIGDVKALGRCSLVSRRFHDLVPLVDSVLVRVDCVI 84
G+DHFDR+PD L+L+IFNR+ D ++LGRCS VS+RF+ LVPLVD +R+D VI
Sbjct: 20 GEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVPLVDDACLRIDRVI 73
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,038,705
Number of extensions: 537408
Number of successful extensions: 1597
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1587
Number of HSP's successfully gapped: 9
Length of query: 412
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 309
Effective length of database: 11,657,759
Effective search space: 3602247531
Effective search space used: 3602247531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)