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Os01g0812200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.84 (0.0211) R2 : 0.892
β1 : 1.31 (0.0782) R2dD : 0.0721 R2D : 0.0546
β2 : 1.92 (0.0776) R2dC : 0.322 R2C : 0.671
β3 : -1.95 (0.109) R2dE : 0.175 R2E : 0.49
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.148 (0.0466) R2dN8 : 0.00337 R2N8 : -0.00796
σ : 0.391
deviance : 70.61
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C
peak time of C : 3.17
E
wheather : temperature
threshold : 11.39
memory length : 121
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.08
open length of G : 20.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.87 0.378 9.85 1.24 1.86 -2.05 -1.55 -0.603 0.134 3.08 11.59 124 5.03 20.5
65.06 0.376 9.84 1.3 1.86 -2.06 -1.31 -- 0.146 3.08 11.54 125 5.05 20.5
69.05 0.387 9.82 1.41 1.93 -1.98 -- 1.2 0.179 3.21 11.66 122 5.04 20.5
70.61 0.391 9.84 1.31 1.92 -1.95 -- -- 0.148 3.17 11.39 121 5.08 20.5
109.98 0.488 9.85 1.36 -- -3.42 -- 2.06 0.0892 -- -1.891 369 4.6 15.9
114.72 0.502 9.88 1.02 2.99 -- -0.67 -- -0.0976 3.48 -- -- -- --
116.1 0.505 9.88 1.03 2.99 -- -- -- -0.0938 3.5 -- -- -- --
112.8 0.495 9.86 1.29 -- -3.36 -- -- 0.0741 -- -2.779 360 4.73 15.9
111.65 0.492 9.88 -- 2.13 -1.59 -- -- -0.0358 3.15 5.734 110 5.12 20.6
615.43 1.16 9.88 1.16 -- -- -- -- -0.0145 -- -- -- -- --
144.2 0.562 9.91 -- 3.01 -- -- -- -0.209 3.5 -- -- -- --
145.98 0.563 9.95 -- -- -4.08 -- -- -0.0386 -- -6.013 647 3.82 12.2
650.82 1.19 9.91 -- -- -- -- -- -0.143 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.71 temperature 10.0 90 > th dose dependent rect. 5 21
9 70.91 temperature 15.0 10 > th dose dependent rect. 6 20
37 76.45 temperature 10.0 720 > th dose dependent rect. 12 4
56 78.52 temperature 10.0 270 > th dose dependent rect. 9 15
59 78.65 radiation 1.0 720 < th dose dependent rect. 24 19
72 79.70 temperature 30.0 270 < th dose independent rect. 24 19
73 79.73 radiation 10.0 43200 < th dose dependent rect. 21 6
79 80.24 temperature 30.0 10 < th dose dependent rect. 2 18
148 82.21 radiation 1.0 720 < th dose independent rect. 24 19
149 82.23 temperature 30.0 90 < th dose dependent rect. 15 14
160 82.83 temperature 30.0 10 < th dose dependent rect. 15 15
166 83.10 temperature 30.0 270 < th dose independent rect. 15 13
172 83.28 temperature 30.0 90 < th dose dependent rect. 11 18
173 83.29 radiation 1.0 720 > th dose independent rect. 12 19
175 83.33 temperature 30.0 90 < th dose dependent rect. 1 22
191 83.73 humidity 50.0 90 > th dose dependent rect. 15 14
205 84.09 radiation 1.0 90 < th dose dependent rect. 2 17
211 84.29 humidity 70.0 90 > th dose independent rect. 15 14
213 84.34 radiation 10.0 90 < th dose dependent rect. 15 14
216 84.37 humidity 60.0 30 > th dose dependent rect. 2 18
219 84.44 temperature 30.0 10 < th dose dependent rect. 10 20
222 84.47 radiation 1.0 720 < th dose dependent rect. 17 2
226 84.56 radiation 40.0 270 < th dose dependent rect. 15 13
228 84.59 humidity 50.0 270 > th dose independent rect. 15 13
229 84.60 temperature 15.0 270 > th dose dependent rect. 19 5
246 84.88 radiation 1.0 90 < th dose independent rect. 2 18
259 85.03 radiation 30.0 270 < th dose independent rect. 15 13
263 85.11 radiation 1.0 90 < th dose dependent sin 1 NA
269 85.14 temperature 10.0 720 > th dose dependent rect. 5 11
302 85.57 temperature 15.0 270 > th dose dependent rect. 17 7
356 86.25 radiation 1.0 720 > th dose independent rect. 12 5
361 86.31 radiation 1.0 720 < th dose independent rect. 17 2
367 86.34 radiation 1.0 720 < th dose dependent rect. 7 21
383 86.51 radiation 1.0 720 < th dose independent rect. 7 21
388 86.61 temperature 15.0 270 > th dose dependent rect. 21 1
394 86.67 atmosphere 995.0 270 > th dose independent rect. 15 13
419 86.93 radiation 30.0 720 < th dose dependent rect. 16 3
420 86.93 temperature 30.0 90 < th dose dependent rect. 11 9
456 87.23 temperature 15.0 10 > th dose dependent rect. 21 5
485 87.45 temperature 15.0 270 > th dose independent rect. 4 11
486 87.46 temperature 20.0 90 > th dose independent rect. 5 21
488 87.50 radiation 1.0 30 > th dose independent sin 0 NA
511 87.76 radiation 1.0 720 < th dose dependent rect. 7 12
513 87.77 humidity 70.0 90 > th dose independent rect. 1 19
541 87.97 radiation 1.0 90 < th dose independent rect. 15 15
546 87.99 temperature 20.0 10 > th dose independent rect. 6 20
604 88.31 radiation 1.0 720 < th dose dependent rect. 15 13
610 88.34 radiation 1.0 720 < th dose dependent rect. 17 11
612 88.35 radiation 1.0 720 < th dose independent rect. 7 13
632 88.42 atmosphere 995.0 720 > th dose independent rect. 17 2
655 88.56 radiation 1.0 90 < th dose independent rect. 10 20
704 88.84 temperature 30.0 90 < th dose dependent rect. 15 5
712 88.90 wind 9.0 270 < th dose independent rect. 4 11
721 88.92 radiation 1.0 720 < th dose independent rect. 15 13
736 88.97 temperature 20.0 270 > th dose independent rect. 5 19
743 89.01 precipitation 0.1 270 < th dose independent rect. 4 11
744 89.01 precipitation 0.1 270 < th dose dependent rect. 4 11
751 89.03 temperature 20.0 270 > th dose independent rect. 20 4
765 89.11 humidity 50.0 10 > th dose dependent rect. 16 14
769 89.12 radiation 10.0 43200 < th dose dependent rect. 24 3
777 89.14 temperature 25.0 90 < th dose independent rect. 11 18
795 89.21 radiation 1.0 30 > th dose independent rect. 6 13
822 89.28 temperature 30.0 10 < th dose dependent rect. 10 11
829 89.33 radiation 1.0 90 < th dose independent rect. 14 22
841 89.39 radiation 1.0 90 < th dose independent sin 1 NA
853 89.43 temperature 30.0 10 < th dose dependent rect. 14 7
855 89.45 humidity 60.0 90 > th dose dependent rect. 11 9
905 89.60 atmosphere 1015.0 270 < th dose independent rect. 4 11
906 89.60 temperature 10.0 270 > th dose independent rect. 15 13
914 89.63 atmosphere 995.0 720 > th dose independent rect. 16 4
922 89.66 temperature 20.0 270 > th dose independent rect. 21 1
961 89.77 radiation 1.0 90 > th dose independent rect. 17 23
963 89.78 atmosphere 995.0 720 > th dose independent rect. 17 10
986 89.82 precipitation 0.1 720 < th dose independent rect. 19 22
989 89.82 precipitation 0.1 720 < th dose dependent rect. 19 22