BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0812200 Os01g0812200|AK072651
(353 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0812200 Cyclin-like F-box domain containing protein 729 0.0
Os05g0490300 Cyclin-like F-box domain containing protein 605 e-173
Os03g0321300 Cyclin-like F-box domain containing protein 366 e-101
Os05g0510400 Cyclin-like F-box domain containing protein 302 2e-82
Os01g0770400 Cyclin-like F-box domain containing protein 297 7e-81
>Os01g0812200 Cyclin-like F-box domain containing protein
Length = 353
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/353 (100%), Positives = 353/353 (100%)
Query: 1 MHPRARIHADPAPEFDQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVPLVSDVY 60
MHPRARIHADPAPEFDQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVPLVSDVY
Sbjct: 1 MHPRARIHADPAPEFDQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVPLVSDVY 60
Query: 61 VKIDRVVATDGDADDALNLSSAKPKNIFSHFFKLMLFTIVKPFHSMRNLNGTGRPLFPLA 120
VKIDRVVATDGDADDALNLSSAKPKNIFSHFFKLMLFTIVKPFHSMRNLNGTGRPLFPLA
Sbjct: 61 VKIDRVVATDGDADDALNLSSAKPKNIFSHFFKLMLFTIVKPFHSMRNLNGTGRPLFPLA 120
Query: 121 QHSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAEYGSTLRNCVILGGTLVDRKPI 180
QHSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAEYGSTLRNCVILGGTLVDRKPI
Sbjct: 121 QHSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAEYGSTLRNCVILGGTLVDRKPI 180
Query: 181 GAEHESSVEDNGSMPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTLRSLVL 240
GAEHESSVEDNGSMPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTLRSLVL
Sbjct: 181 GAEHESSVEDNGSMPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTLRSLVL 240
Query: 241 ADADGQGTLYMGMEQLREFRENKLSASACSNRTQVPACNMKLKYAPYLELPGGMTLQGAT 300
ADADGQGTLYMGMEQLREFRENKLSASACSNRTQVPACNMKLKYAPYLELPGGMTLQGAT
Sbjct: 241 ADADGQGTLYMGMEQLREFRENKLSASACSNRTQVPACNMKLKYAPYLELPGGMTLQGAT 300
Query: 301 LVVIKPSNDGGSGGHSSRKETEAFVSSAFDEPFRFAVKALMKRRTYLLEMNGF 353
LVVIKPSNDGGSGGHSSRKETEAFVSSAFDEPFRFAVKALMKRRTYLLEMNGF
Sbjct: 301 LVVIKPSNDGGSGGHSSRKETEAFVSSAFDEPFRFAVKALMKRRTYLLEMNGF 353
>Os05g0490300 Cyclin-like F-box domain containing protein
Length = 450
Score = 605 bits (1560), Expect = e-173, Method: Compositional matrix adjust.
Identities = 295/352 (83%), Positives = 316/352 (89%), Gaps = 1/352 (0%)
Query: 3 PRARIHADPAPEFDQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVPLVSDVYVK 62
P ARIHADP E DQFD LPD +VL+ILN +EDVRSLGRC+AVSKRF GLVPLV DVYVK
Sbjct: 99 PMARIHADPVLEADQFDRLPDSLVLVILNNVEDVRSLGRCSAVSKRFYGLVPLVHDVYVK 158
Query: 63 IDRVVATDGDADDALNLSSAKPKNIFSHFFKLMLFTIVKPFHSMRNLNGTGRPLFP-LAQ 121
IDRVV DG+A+DALNLSS KP+NI SHF K+MLFTI+KPFHSMR NG GRPLFP LAQ
Sbjct: 159 IDRVVTVDGEAEDALNLSSPKPRNILSHFLKMMLFTIIKPFHSMRGPNGAGRPLFPQLAQ 218
Query: 122 HSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAEYGSTLRNCVILGGTLVDRKPIG 181
HSP VLRNF+ + NLRVELPSGDVGTEEGVLLKWRAEYGSTL+NCVILGGT VDRKP+G
Sbjct: 219 HSPAQVLRNFTHIRNLRVELPSGDVGTEEGVLLKWRAEYGSTLQNCVILGGTQVDRKPVG 278
Query: 182 AEHESSVEDNGSMPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTLRSLVLA 241
AEHE EDNGSMPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTL SLVL
Sbjct: 279 AEHELYSEDNGSMPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTLTSLVLT 338
Query: 242 DADGQGTLYMGMEQLREFRENKLSASACSNRTQVPACNMKLKYAPYLELPGGMTLQGATL 301
DADGQGTL MG EQL+EFREN+LSASACSNRTQVPACNMKLKYAPYLELPGG+ LQGATL
Sbjct: 339 DADGQGTLSMGAEQLKEFRENQLSASACSNRTQVPACNMKLKYAPYLELPGGIALQGATL 398
Query: 302 VVIKPSNDGGSGGHSSRKETEAFVSSAFDEPFRFAVKALMKRRTYLLEMNGF 353
V IKPS +G +GGH+SRKET+AFVS AFD PF+FAVKALMKRRTYLLEMNGF
Sbjct: 399 VAIKPSPEGSNGGHTSRKETDAFVSGAFDGPFKFAVKALMKRRTYLLEMNGF 450
>Os03g0321300 Cyclin-like F-box domain containing protein
Length = 384
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 211/385 (54%), Positives = 254/385 (65%), Gaps = 33/385 (8%)
Query: 1 MHPRARIHAD------PAPEFDQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVP 54
M R R+ A+ A D FD +PD +VLLI N+L D RSLGRC+AVSKRF+ LVP
Sbjct: 1 MQSRHRVFAEDLLLPREAEGEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVP 60
Query: 55 LVSDVYVKIDRVVATDGDADDALNLSSAKP--KNIFSHFFKLMLFTIVKPF--------- 103
LV D ++IDRV+ DADDAL L+ +P + + SH K ML ++KPF
Sbjct: 61 LVDDACLRIDRVITDAADADDALGLAGPRPAGRGVLSHLLKAMLLAVLKPFGHCDAGVRG 120
Query: 104 ----HSMRNLNGTGRPLFPLAQHSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAE 159
G G HSP VL+NFS + NLR+ELP DVGT++GVLL+W+A
Sbjct: 121 GGGGERAGKHGGGGGGCGAQQHHSPAQVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKAV 180
Query: 160 YGSTLRNCVILGGTLVDRKPI-----------GAEHESSVEDNGSMPESFYTNGGLKLRV 208
+GSTL++CVILGGT VDR G S +D GS+PESFYTNGGLKLRV
Sbjct: 181 FGSTLQSCVILGGTRVDRAAAPAAAAATATAAGDSEASQGDDTGSIPESFYTNGGLKLRV 240
Query: 209 VWTISSLIAASTRHYLLRSIIKDHPTLRSLVLADADGQGTLYMGMEQLREFRENKLSASA 268
VWTISSLIAA+TRHYLLR I+K+HPTL + L DA GQGTL MG +Q+REFR+ L+A+A
Sbjct: 241 VWTISSLIAAATRHYLLREIVKEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAAA 300
Query: 269 CSNRTQVPACNMKLKYAPYLELPGGMTLQGATLVVIKPSNDGGSGGHSSRKETEAFVSSA 328
+NRTQVPACNMKL+YAP LEL G +QGATLVVIKP G RKE + FV+ A
Sbjct: 301 AANRTQVPACNMKLRYAPMLELSDGTRIQGATLVVIKPVG-EAGGIGGGRKELDEFVADA 359
Query: 329 FDEPFRFAVKALMKRRTYLLEMNGF 353
FD P+R AV AL KRRTYLLEMNGF
Sbjct: 360 FDGPYREAVSALSKRRTYLLEMNGF 384
>Os05g0510400 Cyclin-like F-box domain containing protein
Length = 412
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/380 (45%), Positives = 229/380 (60%), Gaps = 42/380 (11%)
Query: 16 DQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVPLVSDVYVKIDRVVATDGDADD 75
D FD LPDP++L+I N++ DV++LGRC+ VS+RF LVPLV V V++D V+ D +
Sbjct: 33 DHFDRLPDPLLLVIFNRIGDVKALGRCSLVSRRFHDLVPLVDSVLVRVDCVIPDDPASSS 92
Query: 76 ALNLSSA----------KPKNIFSHFFKLMLFTIVKPFHSMRNLNGTGRPLFPLA----- 120
+ + S + + + +FS +++L IVKP ++ + LA
Sbjct: 93 SSSSSPSAAPSSPTASARARTVFSQIARIVLGGIVKPIQALGQILSPANSASVLAASVTS 152
Query: 121 --------------------QHSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAEY 160
HSP VLR+F ++ LR+ELP+G++ EEGVLLKW+A++
Sbjct: 153 SPSSSSSSSSSSPPLPGDVSHHSPSEVLRSFKELRRLRIELPAGELSMEEGVLLKWKADF 212
Query: 161 GSTLRNCVILGGTLVDRKPIGAEHE----SSVEDNGSMPESFYTNGGLKLRVVWTISSLI 216
GSTL +CVILG + + ++ GS+PESFYTNGGLKLRVVWTISSLI
Sbjct: 213 GSTLGSCVILGASSAGKDGGAGAAPAVDCGESDETGSIPESFYTNGGLKLRVVWTISSLI 272
Query: 217 AASTRHYLLRSIIKDHPTLRSLVLADADGQGTLYMGMEQLREFRENKLSASACSNRTQVP 276
AAS RHYLL+ II DH TL SL L DADGQG L M QL+E R +SAS S+RT +P
Sbjct: 273 AASARHYLLQPIIADHTTLESLDLTDADGQGVLTMDKWQLQELRVKPVSASGGSHRTLMP 332
Query: 277 ACNMKLKYAPYLELPGGMTLQGATLVVIKPSNDGGSG---GHSSRKETEAFVSSAFDEPF 333
A +M+L YAP++ELPGG+ L GATLV IKP+ + + +VS AF+EP+
Sbjct: 333 ALSMRLWYAPHIELPGGLVLNGATLVAIKPTEEATRDTVGSGIAGSAGGCWVSDAFEEPY 392
Query: 334 RFAVKALMKRRTYLLEMNGF 353
R AV L+KRRTY LEMN F
Sbjct: 393 RTAVGMLLKRRTYSLEMNSF 412
>Os01g0770400 Cyclin-like F-box domain containing protein
Length = 396
Score = 297 bits (761), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 172/389 (44%), Positives = 231/389 (59%), Gaps = 57/389 (14%)
Query: 16 DQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVPLVSDVYVKIDRVVATD----- 70
DQF+ LPD V+L + ++ DV++LGRCA VS+RF LVPLV V+V++D V++ D
Sbjct: 14 DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVISDDPPPSS 73
Query: 71 -----GDADDALNLSSAKPKNIFSHFFKLMLFTIVKPFHSMRNLNGTGRPLFPLA----- 120
A +A+ + +H +L+L IV+P ++ G+ L P A
Sbjct: 74 AGSAQAAAAAEGGPPAARGRGALAHLARLVLGGIVRPIQAL------GQILSPAAATVSR 127
Query: 121 -----------------QHSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAEYGST 163
HSP VLR+F ++ L +ELP+G++G E+GVLLKW+A++GST
Sbjct: 128 RSAAPPAAPAPAAADVSHHSPSEVLRSFKELRRLHIELPTGELGIEDGVLLKWKADFGST 187
Query: 164 LRNCVILGGTLVDRKPIGAEHESSV----------------EDNGSMPESFYTNGGLKLR 207
L +CVILG + V KP ++ G++PES YTNGGLKLR
Sbjct: 188 LGSCVILGASSVTSKPPPPPAAPPPTAADSSAASPDSSREPDELGNIPESLYTNGGLKLR 247
Query: 208 VVWTISSLIAASTRHYLLRSIIKDHPTLRSLVLADADGQGTLYMGMEQLREFRENKLSAS 267
VVWTISSLIAAS RHYLL+ II DH TL SL L DADGQG L M QL+E R +SAS
Sbjct: 248 VVWTISSLIAASARHYLLQPIIADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPVSAS 307
Query: 268 ACSNRTQVPACNMKLKYAPYLELPGGMTLQGATLVVIKPSND---GGSGGHSSRKETEAF 324
S+RT +PA +M+L YAP++ELPGG L+GATLV I+PS D G G + ++
Sbjct: 308 GNSHRTLMPALSMRLWYAPHIELPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTGASW 367
Query: 325 VSSAFDEPFRFAVKALMKRRTYLLEMNGF 353
+ AF+EP+R A + L+KRRTY LEMN F
Sbjct: 368 ILDAFEEPYRTAAQVLLKRRTYSLEMNSF 396
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,861,865
Number of extensions: 563365
Number of successful extensions: 1369
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1357
Number of HSP's successfully gapped: 5
Length of query: 353
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 251
Effective length of database: 11,709,973
Effective search space: 2939203223
Effective search space used: 2939203223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)