Os01g0770400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0770400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.95 | 0.22 | 12.2 | 0.331 | 0.949 | -0.256 | 0.275 | 0.33 | 0.111 | 8.89 | 20.52 | 811 | -- | -- |
| 22.22 | 0.22 | 12.2 | 0.302 | 0.963 | -0.301 | 0.149 | -- | 0.103 | 8.84 | 20.55 | 1088 | -- | -- |
| 22.18 | 0.219 | 12.2 | 0.322 | 0.947 | -0.265 | -- | 0.249 | 0.102 | 8.89 | 20.54 | 810 | -- | -- |
| 22.32 | 0.22 | 12.2 | 0.301 | 0.961 | -0.305 | -- | -- | 0.105 | 8.84 | 20.51 | 1088 | -- | -- |
| 70.9 | 0.392 | 12.2 | 0.449 | -- | -0.454 | -- | 0.16 | 0.155 | -- | 21.3 | 750 | -- | -- |
| 24.62 | 0.233 | 12.2 | 0.162 | 0.984 | -- | 0.175 | -- | 0.0327 | 8.95 | -- | -- | -- | -- |
| 24.72 | 0.233 | 12.2 | 0.168 | 0.983 | -- | -- | -- | 0.0328 | 8.95 | -- | -- | -- | -- |
| 57.52 | 0.353 | 12.2 | 0.448 | -- | -0.658 | -- | -- | 0.206 | -- | 26.2 | 618 | -- | -- |
| 24.12 | 0.229 | 12.2 | -- | 0.955 | -0.205 | -- | -- | 0.0517 | 8.88 | 20.5 | 768 | -- | -- |
| 80.07 | 0.418 | 12.2 | 0.167 | -- | -- | -- | -- | 0.0393 | -- | -- | -- | -- | -- |
| 25.47 | 0.236 | 12.2 | -- | 0.983 | -- | -- | -- | 0.0141 | 8.94 | -- | -- | -- | -- |
| 60.65 | 0.363 | 12.2 | -- | -- | -0.622 | -- | -- | 0.17 | -- | 26.23 | 613 | -- | -- |
| 80.81 | 0.42 | 12.2 | -- | -- | -- | -- | -- | 0.0207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.44 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 2 | 20.48 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 5 | 20.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 6 | 20.56 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 9 |
| 15 | 20.63 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 26 | 20.70 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 5 |
| 42 | 20.79 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 44 | 20.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 48 | 20.81 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 55 | 20.86 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 61 | 20.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 63 | 20.86 | humidity | 70 | 14400 | > th | dose dependent | rect. | 20 | 13 |
| 71 | 20.87 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 77 | 20.88 | humidity | 70 | 14400 | > th | dose dependent | sin | 9 | NA |
| 97 | 20.91 | humidity | 70 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 99 | 20.91 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 12 |
| 111 | 20.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 121 | 20.94 | temperature | 15 | 270 | > th | dose dependent | sin | 5 | NA |
| 125 | 20.94 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 155 | 20.97 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 1 |
| 170 | 20.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 277 | 21.05 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 280 | 21.05 | humidity | 50 | 14400 | > th | dose dependent | rect. | 1 | 8 |
| 296 | 21.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 336 | 21.08 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 355 | 21.09 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 448 | 21.12 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 542 | 21.15 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 573 | 21.16 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 579 | 21.16 | humidity | 80 | 14400 | > th | dose dependent | no | NA | NA |
| 601 | 21.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 19 |
| 605 | 21.16 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 632 | 21.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 640 | 21.17 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 642 | 21.17 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 23 |
| 654 | 21.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 763 | 21.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 767 | 21.21 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 871 | 21.24 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 916 | 21.25 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 958 | 21.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 961 | 21.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |