BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0770400 Os01g0770400|AK061585
(396 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0770400 Cyclin-like F-box domain containing protein 543 e-154
Os05g0510400 Cyclin-like F-box domain containing protein 424 e-119
Os01g0812200 Cyclin-like F-box domain containing protein 269 3e-72
Os05g0490300 Cyclin-like F-box domain containing protein 233 2e-61
Os03g0321300 Cyclin-like F-box domain containing protein 209 2e-54
>Os01g0770400 Cyclin-like F-box domain containing protein
Length = 396
Score = 543 bits (1398), Expect = e-154, Method: Compositional matrix adjust.
Identities = 288/383 (75%), Positives = 288/383 (75%)
Query: 14 DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVISDDXXXXX 73
DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVISDD
Sbjct: 14 DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVISDDPPPSS 73
Query: 74 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLGGIVRPIQALGQILXXXXXXXXXXXXXXX 133
VLGGIVRPIQALGQIL
Sbjct: 74 AGSAQAAAAAEGGPPAARGRGALAHLARLVLGGIVRPIQALGQILSPAAATVSRRSAAPP 133
Query: 134 XXXXXXXXXXXXXXXXEVLRSFKELRRLHIELPTGELGIEDGVLLKWKADFGSTLGSCVI 193
EVLRSFKELRRLHIELPTGELGIEDGVLLKWKADFGSTLGSCVI
Sbjct: 134 AAPAPAAADVSHHSPSEVLRSFKELRRLHIELPTGELGIEDGVLLKWKADFGSTLGSCVI 193
Query: 194 LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREPDELGNIPESLYTNGGLKLRVVWTIS 253
LG REPDELGNIPESLYTNGGLKLRVVWTIS
Sbjct: 194 LGASSVTSKPPPPPAAPPPTAADSSAASPDSSREPDELGNIPESLYTNGGLKLRVVWTIS 253
Query: 254 SLIAASARHYLLQPIIADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPVSASGNSHRT 313
SLIAASARHYLLQPIIADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPVSASGNSHRT
Sbjct: 254 SLIAASARHYLLQPIIADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPVSASGNSHRT 313
Query: 314 LMPALSMRLWYAPHIELPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTGASWILDAFE 373
LMPALSMRLWYAPHIELPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTGASWILDAFE
Sbjct: 314 LMPALSMRLWYAPHIELPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTGASWILDAFE 373
Query: 374 EPYRTAAQVLLKRRTYSLEMNSF 396
EPYRTAAQVLLKRRTYSLEMNSF
Sbjct: 374 EPYRTAAQVLLKRRTYSLEMNSF 396
>Os05g0510400 Cyclin-like F-box domain containing protein
Length = 412
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/392 (60%), Positives = 257/392 (65%), Gaps = 21/392 (5%)
Query: 14 DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVISDDXXXXX 73
D F+RLPD +LL +F RIGDVKALGRC+LVSRRFH LVPLVDSV VRVDCVI DD
Sbjct: 33 DHFDRLPDPLLLVIFNRIGDVKALGRCSLVSRRFHDLVPLVDSVLVRVDCVIPDDPASSS 92
Query: 74 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLGGIVRPIQALGQILXXXXXXXXXXXXXXX 133
VLGGIV+PIQALGQIL
Sbjct: 93 SSSSSPSAAPSSPTASARARTVFSQIARIVLGGIVKPIQALGQILSPANSASVLAASVTS 152
Query: 134 XXXXXXXXX---------XXXXXXXEVLRSFKELRRLHIELPTGELGIEDGVLLKWKADF 184
EVLRSFKELRRL IELP GEL +E+GVLLKWKADF
Sbjct: 153 SPSSSSSSSSSSPPLPGDVSHHSPSEVLRSFKELRRLRIELPAGELSMEEGVLLKWKADF 212
Query: 185 GSTLGSCVILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREPDELGNIPESLYTNGGL 244
GSTLGSCVILG E DE G+IPES YTNGGL
Sbjct: 213 GSTLGSCVILGASSAGKDGGAGAAPAVDCG------------ESDETGSIPESFYTNGGL 260
Query: 245 KLRVVWTISSLIAASARHYLLQPIIADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPV 304
KLRVVWTISSLIAASARHYLLQPIIADH+TLESLDLTDADGQGVLTMDK QLQELRV+PV
Sbjct: 261 KLRVVWTISSLIAASARHYLLQPIIADHTTLESLDLTDADGQGVLTMDKWQLQELRVKPV 320
Query: 305 SASGNSHRTLMPALSMRLWYAPHIELPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTG 364
SASG SHRTLMPALSMRLWYAPHIELPGG +L GATLVAI+P+E+ R+ G +AG G
Sbjct: 321 SASGGSHRTLMPALSMRLWYAPHIELPGGLVLNGATLVAIKPTEEATRDTVGSGIAGSAG 380
Query: 365 ASWILDAFEEPYRTAAQVLLKRRTYSLEMNSF 396
W+ DAFEEPYRTA +LLKRRTYSLEMNSF
Sbjct: 381 GCWVSDAFEEPYRTAVGMLLKRRTYSLEMNSF 412
>Os01g0812200 Cyclin-like F-box domain containing protein
Length = 353
Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/386 (41%), Positives = 209/386 (54%), Gaps = 51/386 (13%)
Query: 14 DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVIS---DDXX 70
DQF+ LPD V+L + ++ DV++LGRCA VS+RF LVPLV V+V++D V++ D
Sbjct: 16 DQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVPLVSDVYVKIDRVVATDGDADD 75
Query: 71 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLGGIVRPIQALGQILXXXXXXXXXXXX 130
L G RP+ L Q
Sbjct: 76 ALNLSSAKPKNIFSHFFKLMLFTIVKPFHSMRNLNGTGRPLFPLAQ-------------- 121
Query: 131 XXXXXXXXXXXXXXXXXXXEVLRSFKELRRLHIELPTGELGIEDGVLLKWKADFGSTLGS 190
VLR+F ++ L +ELP+G++G E+GVLLKW+A++GSTL +
Sbjct: 122 ---------------HSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAEYGSTLRN 166
Query: 191 CVILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREPDELGNIPESLYTNGGLKLRVVW 250
CVILG ++ G++PES YTNGGLKLRVVW
Sbjct: 167 CVILGGTLVDRKPIGAEHESSV----------------EDNGSMPESFYTNGGLKLRVVW 210
Query: 251 TISSLIAASARHYLLQPIIADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPVSASGNS 310
TISSLIAAS RHYLL+ II DH TL SL L DADGQG L M QL+E R +SAS S
Sbjct: 211 TISSLIAASTRHYLLRSIIKDHPTLRSLVLADADGQGTLYMGMEQLREFRENKLSASACS 270
Query: 311 HRTLMPALSMRLWYAPHIELPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTGASWILD 370
+RT +PA +M+L YAP++ELPGG L+GATLV I+PS D G G + +++
Sbjct: 271 NRTQVPACNMKLKYAPYLELPGGMTLQGATLVVIKPSND---GGSGGHSSRKETEAFVSS 327
Query: 371 AFEEPYRTAAQVLLKRRTYSLEMNSF 396
AF+EP+R A + L+KRRTY LEMN F
Sbjct: 328 AFDEPFRFAVKALMKRRTYLLEMNGF 353
>Os05g0490300 Cyclin-like F-box domain containing protein
Length = 450
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/247 (51%), Positives = 163/247 (65%), Gaps = 19/247 (7%)
Query: 150 EVLRSFKELRRLHIELPTGELGIEDGVLLKWKADFGSTLGSCVILGXXXXXXXXXXXXXX 209
+VLR+F +R L +ELP+G++G E+GVLLKW+A++GSTL +CVILG
Sbjct: 223 QVLRNFTHIRNLRVELPSGDVGTEEGVLLKWRAEYGSTLQNCVILGGTQVDRKPVGAEHE 282
Query: 210 XXXXXXXXXXXXXXXXREPDELGNIPESLYTNGGLKLRVVWTISSLIAASARHYLLQPII 269
++ G++PES YTNGGLKLRVVWTISSLIAAS RHYLL+ II
Sbjct: 283 LYS----------------EDNGSMPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSII 326
Query: 270 ADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPVSASGNSHRTLMPALSMRLWYAPHIE 329
DH TL SL LTDADGQG L+M QL+E R +SAS S+RT +PA +M+L YAP++E
Sbjct: 327 KDHPTLTSLVLTDADGQGTLSMGAEQLKEFRENQLSASACSNRTQVPACNMKLKYAPYLE 386
Query: 330 LPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTGASWILDAFEEPYRTAAQVLLKRRTY 389
LPGG L+GATLVAI+PS + GG T A ++ AF+ P++ A + L+KRRTY
Sbjct: 387 LPGGIALQGATLVAIKPSPE--GSNGGHTSRKETDA-FVSGAFDGPFKFAVKALMKRRTY 443
Query: 390 SLEMNSF 396
LEMN F
Sbjct: 444 LLEMNGF 450
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 43/55 (78%)
Query: 14 DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVISDD 68
DQF+RLPD ++L + + DV++LGRC+ VS+RF+ LVPLV V+V++D V++ D
Sbjct: 112 DQFDRLPDSLVLVILNNVEDVRSLGRCSAVSKRFYGLVPLVHDVYVKIDRVVTVD 166
>Os03g0321300 Cyclin-like F-box domain containing protein
Length = 384
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 157/247 (63%), Gaps = 9/247 (3%)
Query: 150 EVLRSFKELRRLHIELPTGELGIEDGVLLKWKADFGSTLGSCVILGXXXXXXXXXXXXXX 209
+VL++F +R L +ELP ++G +DGVLL+WKA FGSTL SCVILG
Sbjct: 147 QVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKAVFGSTLQSCVILGGTRVDRAAAPAAAA 206
Query: 210 XXXXXXXXXXXXXXXXREPDELGNIPESLYTNGGLKLRVVWTISSLIAASARHYLLQPII 269
+ D+ G+IPES YTNGGLKLRVVWTISSLIAA+ RHYLL+ I+
Sbjct: 207 ATATAAGDSEAS-----QGDDTGSIPESFYTNGGLKLRVVWTISSLIAAATRHYLLREIV 261
Query: 270 ADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPVSASGNSHRTLMPALSMRLWYAPHIE 329
+H TLE + LTDA GQG L+M + Q++E R +P++A+ ++RT +PA +M+L YAP +E
Sbjct: 262 KEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAAAAANRTQVPACNMKLRYAPMLE 321
Query: 330 LPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTGASWILDAFEEPYRTAAQVLLKRRTY 389
L G ++GATLV I+P + E GGI ++ DAF+ PYR A L KRRTY
Sbjct: 322 LSDGTRIQGATLVVIKP----VGEAGGIGGGRKELDEFVADAFDGPYREAVSALSKRRTY 377
Query: 390 SLEMNSF 396
LEMN F
Sbjct: 378 LLEMNGF 384
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 42/53 (79%)
Query: 14 DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVIS 66
D F+R+PD ++L +F R+ D ++LGRC+ VS+RF++LVPLVD +R+D VI+
Sbjct: 22 DHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVPLVDDACLRIDRVIT 74
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,129,330
Number of extensions: 360587
Number of successful extensions: 845
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 11
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)