Os05g0490300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os05g0490300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.02 | 0.367 | 7.44 | 0.552 | 0.924 | -0.898 | 0.4 | -0.113 | -0.375 | 11.1 | 9.947 | 46 | -- | -- |
| 61.02 | 0.364 | 7.44 | 0.548 | 0.935 | -0.892 | 0.516 | -- | -0.375 | 11.1 | 9.901 | 47 | -- | -- |
| 61.18 | 0.364 | 7.44 | 0.558 | 0.943 | -0.883 | -- | -0.384 | -0.376 | 11 | 9.643 | 53 | -- | -- |
| 62.17 | 0.367 | 7.44 | 0.568 | 0.914 | -0.907 | -- | -- | -0.374 | 11.1 | 9.918 | 47 | -- | -- |
| 72.35 | 0.398 | 7.45 | 0.555 | -- | -1.55 | -- | -0.327 | -0.336 | -- | 9.643 | 53 | -- | -- |
| 74.28 | 0.404 | 7.41 | 0.528 | 1.92 | -- | 0.543 | -- | -0.306 | 11.7 | -- | -- | -- | -- |
| 75.56 | 0.407 | 7.41 | 0.549 | 1.92 | -- | -- | -- | -0.304 | 11.7 | -- | -- | -- | -- |
| 72.84 | 0.399 | 7.45 | 0.567 | -- | -1.56 | -- | -- | -0.331 | -- | 9.918 | 47 | -- | -- |
| 70.53 | 0.391 | 7.45 | -- | 0.934 | -0.902 | -- | -- | -0.434 | 11 | 11.52 | 47 | -- | -- |
| 307.13 | 0.819 | 7.45 | 0.495 | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
| 83.51 | 0.427 | 7.42 | -- | 1.91 | -- | -- | -- | -0.366 | 11.6 | -- | -- | -- | -- |
| 80.17 | 0.417 | 7.48 | -- | -- | -1.57 | -- | -- | -0.446 | -- | 11.1 | 14 | -- | -- |
| 313.59 | 0.827 | 7.46 | -- | -- | -- | -- | -- | -0.382 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 3 | 60.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 12 | 60.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 18 | 60.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 20 | 60.73 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 28 | 60.91 | radiation | 10 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 29 | 60.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 30 | 60.97 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 37 | 61.00 | radiation | 10 | 30 | < th | dose dependent | rect. | 1 | 21 |
| 76 | 61.44 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 80 | 61.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 81 | 61.47 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 82 | 61.47 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 85 | 61.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 89 | 61.52 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 90 | 61.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 94 | 61.53 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 98 | 61.53 | radiation | 10 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 99 | 61.54 | radiation | 10 | 30 | < th | dose dependent | no | NA | NA |
| 101 | 61.54 | radiation | 10 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 120 | 61.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 138 | 61.65 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 140 | 61.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 146 | 61.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 164 | 61.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 166 | 61.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 183 | 61.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 196 | 61.69 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 202 | 61.71 | radiation | 1 | 14400 | > th | dose independent | sin | 7 | NA |
| 213 | 61.72 | radiation | 1 | 14400 | < th | dose independent | sin | 7 | NA |
| 319 | 61.79 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 370 | 61.85 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 375 | 61.87 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 396 | 61.90 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 399 | 61.91 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 418 | 61.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 436 | 61.93 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 471 | 61.97 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 473 | 61.97 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 474 | 61.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 476 | 61.98 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 478 | 61.99 | wind | 9 | 43200 | > th | dose independent | sin | 0 | NA |
| 482 | 61.99 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 484 | 61.99 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 485 | 61.99 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 496 | 62.00 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 498 | 62.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 506 | 62.02 | wind | 9 | 43200 | < th | dose independent | sin | 0 | NA |
| 512 | 62.02 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 517 | 62.03 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 518 | 62.03 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 543 | 62.05 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 546 | 62.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 12 |
| 547 | 62.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 563 | 62.07 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 566 | 62.07 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 567 | 62.07 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 19 |
| 572 | 62.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 573 | 62.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 587 | 62.08 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 10 |
| 603 | 62.09 | wind | 9 | 43200 | < th | dose independent | rect. | 22 | 20 |
| 604 | 62.09 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 616 | 62.10 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 617 | 62.10 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 644 | 62.11 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 646 | 62.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 647 | 62.11 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 658 | 62.12 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 725 | 62.14 | wind | 9 | 43200 | > th | dose independent | rect. | 22 | 20 |
| 758 | 62.15 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 19 |
| 763 | 62.15 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 23 |
| 851 | 62.18 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 881 | 62.19 | wind | 7 | 43200 | > th | dose dependent | sin | 0 | NA |
| 905 | 62.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 928 | 62.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 18 |
| 929 | 62.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 21 |
| 947 | 62.22 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 987 | 62.24 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |