BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0481900 Os05g0481900|AK119626
(437 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0481900 Auxin Efflux Carrier family protein 795 0.0
Os01g0818000 Auxin Efflux Carrier family protein 611 e-175
Os08g0191000 Auxin Efflux Carrier family protein 278 4e-75
Os09g0554300 Auxin Efflux Carrier family protein 177 1e-44
Os09g0555100 Auxin Efflux Carrier family protein 166 2e-41
Os09g0491740 Auxin Efflux Carrier family protein 140 2e-33
>Os05g0481900 Auxin Efflux Carrier family protein
Length = 437
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/437 (91%), Positives = 402/437 (91%)
Query: 1 MMGRSVLEMVVXXXXXXXXXXXESVLGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPS 60
MMGRSVLEMVV ESVLGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPS
Sbjct: 1 MMGRSVLEMVVAAAQGGGGAAGESVLGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPS 60
Query: 61 GRKLLNALVFSLLLPCLIFAQLGRSITIDKIMEWWFIPANIALGAVSASLVGLIVALIVR 120
GRKLLNALVFSLLLPCLIFAQLGRSITIDKIMEWWFIPANIALGAVSASLVGLIVALIVR
Sbjct: 61 GRKLLNALVFSLLLPCLIFAQLGRSITIDKIMEWWFIPANIALGAVSASLVGLIVALIVR 120
Query: 121 PPYPYFKFTITHXXXXXXXXXPLVLISALCRDQLNPFGDSNKCTQDGNAYLSFGQWVGAI 180
PPYPYFKFTITH PLVLISALCRDQLNPFGDSNKCTQDGNAYLSFGQWVGAI
Sbjct: 121 PPYPYFKFTITHIGIGNIGNIPLVLISALCRDQLNPFGDSNKCTQDGNAYLSFGQWVGAI 180
Query: 181 IVYTYVFKMLAPPPGQTFDSCDEERDKLPIKAPNTMSSVAKYPSSAHGNTHXXXXXXXXX 240
IVYTYVFKMLAPPPGQTFDSCDEERDKLPIKAPNTMSSVAKYPSSAHGNTH
Sbjct: 181 IVYTYVFKMLAPPPGQTFDSCDEERDKLPIKAPNTMSSVAKYPSSAHGNTHEEEPLLSIE 240
Query: 241 XXXXXXGQDVHSLGSKIMIPIKGMVRFLQKKQLLQPPIIASVLAITLGVVPFLKNLILTD 300
GQDVHSLGSKIMIPIKGMVRFLQKKQLLQPPIIASVLAITLGVVPFLKNLILTD
Sbjct: 241 EEEEEEGQDVHSLGSKIMIPIKGMVRFLQKKQLLQPPIIASVLAITLGVVPFLKNLILTD 300
Query: 301 DAPLFFLTDSCLILGEAMIPCILLAVGGNLVDGPGEGSRRLGVRTTVAIIFARLILVPIA 360
DAPLFFLTDSCLILGEAMIPCILLAVGGNLVDGPGEGSRRLGVRTTVAIIFARLILVPIA
Sbjct: 301 DAPLFFLTDSCLILGEAMIPCILLAVGGNLVDGPGEGSRRLGVRTTVAIIFARLILVPIA 360
Query: 361 GIGIVSFADKLGFIPKGDKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILFWVHIF 420
GIGIVSFADKLGFIPKGDKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILFWVHIF
Sbjct: 361 GIGIVSFADKLGFIPKGDKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILFWVHIF 420
Query: 421 AVFSMAGWIILYLTMLF 437
AVFSMAGWIILYLTMLF
Sbjct: 421 AVFSMAGWIILYLTMLF 437
>Os01g0818000 Auxin Efflux Carrier family protein
Length = 432
Score = 611 bits (1575), Expect = e-175, Method: Compositional matrix adjust.
Identities = 310/440 (70%), Positives = 352/440 (80%), Gaps = 11/440 (2%)
Query: 1 MMGRSVLEMVVXXXXXXXXXXXESVLGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPS 60
MM RS++E + SV M +YAVLPIAKVF VCFMGFLMASK V +L+P+
Sbjct: 1 MMERSLMEALATAAQGGTVG--TSVFDMLKYAVLPIAKVFTVCFMGFLMASKYVNILQPN 58
Query: 61 GRKLLNALVFSLLLPCLIFAQLGRSITIDKIMEWWFIPANIALGAVSASLVGLIVALIVR 120
GRKLLN LVFSLLLPCLIF+QLGR+ITI+K+++WW+IP NI +GAVS SL+G +VA I+R
Sbjct: 59 GRKLLNGLVFSLLLPCLIFSQLGRAITIEKMLQWWYIPVNIVVGAVSGSLIGFVVASIIR 118
Query: 121 PPYPYFKFTITHXXXXXXXXXPLVLISALCRDQLNPFGDSNKCTQDGNAYLSFGQWVGAI 180
PPYPYFKFT+ H PLVLI+ALCRD NPFGDS+KC +DGNAY+SFGQWVGAI
Sbjct: 119 PPYPYFKFTVIHIGIGNIGNIPLVLIAALCRDPTNPFGDSDKCNEDGNAYISFGQWVGAI 178
Query: 181 IVYTYVFKMLAPPPGQTFDSCDEERDKLPIKAP--NTMSSVAKYPSSAHGNTHXXXXXXX 238
IVYTYVFKMLAPPPG++FDS +E D LPIKA N + KYP+S +T
Sbjct: 179 IVYTYVFKMLAPPPGESFDSAEE--DILPIKASGDNVVPEKGKYPTSTRTST----VPEN 232
Query: 239 XXXXXXXXGQDVH-SLGSKIMIPIKGMVRFLQKKQLLQPPIIASVLAITLGVVPFLKNLI 297
++V SLGSKIM ++ MV+FL+ KQLLQPPIIASV AI +GVVP LKN +
Sbjct: 233 EPLLSSEGDKNVSTSLGSKIMGIVRSMVKFLKDKQLLQPPIIASVFAIAIGVVPVLKNFV 292
Query: 298 LTDDAPLFFLTDSCLILGEAMIPCILLAVGGNLVDGPGEGSRRLGVRTTVAIIFARLILV 357
LTDDAPLFF TDSCLILGEAMIPCILLAVGGNLVDGPGEGS RLGVRTTVAIIFARLILV
Sbjct: 293 LTDDAPLFFFTDSCLILGEAMIPCILLAVGGNLVDGPGEGSNRLGVRTTVAIIFARLILV 352
Query: 358 PIAGIGIVSFADKLGFIPKGDKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILFWV 417
P+AG+GI+ DKLGFIPK DKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILFWV
Sbjct: 353 PLAGVGIIVLVDKLGFIPKDDKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILFWV 412
Query: 418 HIFAVFSMAGWIILYLTMLF 437
HIFAVFSMAGWIILYL++LF
Sbjct: 413 HIFAVFSMAGWIILYLSLLF 432
>Os08g0191000 Auxin Efflux Carrier family protein
Length = 455
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 159/444 (35%), Positives = 251/444 (56%), Gaps = 36/444 (8%)
Query: 24 SVLGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPSGRKLLNALVFSLLLPCLIFAQLG 83
+V G + AV+P+ K+ + +G ++++ R ++ + KLL+ LVF+L LPCLIF LG
Sbjct: 15 TVHGDWVSAVMPLMKLLCLTVIGLVLSNPRTQIIPKATFKLLSKLVFALFLPCLIFVHLG 74
Query: 84 RSITIDKIMEWWFIPANIALGAVSASLVGLIVALIVRPPYPYFKFTITHXXXXXXXXXPL 143
+S+TI I++WWFIP N+ + ++G IVALI RPP +F+FT+ P+
Sbjct: 75 QSVTIQNILDWWFIPVNVLISTAIGCILGYIVALICRPPPQFFRFTVIMTGFGNTGNLPI 134
Query: 144 VLISALCRDQLNPFGDSNKCTQDGNAYLSFGQWVGAIIVYTYVFKMLAPPPGQTFDSCDE 203
+I ++C +PFG C + G AY+SF QWV I+VYT V+ M+ PP Q ++ E
Sbjct: 135 AIIGSVCHTTDHPFGPG--CHRKGVAYVSFAQWVAVILVYTLVYHMMEPP-MQFYEIVGE 191
Query: 204 ERD--KLPIKAPNTMSSV---AKYPSSAHGNTHXXXXXXXXXXXXXXXGQDVHSLGS--- 255
+ + P + N S+ A++P A T G ++
Sbjct: 192 GNEIVEEPAQISNYSRSLLHEAEWPGMADKETEHSKTPFIARVFMSISGSSQNTFPDIDF 251
Query: 256 ----------------------KIMIPIKGMVRFLQKKQLLQPPIIASVLAITLGVVPFL 293
K++ I+ + + +LQPP IAS+LAI +G+VP
Sbjct: 252 AEEGTSGAGPSSPKSLRCLAEPKVVRRIRVVAEKTPIQHVLQPPTIASLLAIVIGMVPLF 311
Query: 294 KNLILTDDAPLFFLTDSCLILGEAMIPCILLAVGGNLVDGPGEGSRRLGVRTTVAIIFAR 353
K+ + DAPL F TDS IL +A++P ++L +GG L +GP + + LG+RT II AR
Sbjct: 312 KDFVFVPDAPLSFFTDSLEILAQAVVPSVMLILGGMLAEGPKDNA--LGIRTITGIIVAR 369
Query: 354 LILVPIAGIGIVSFADKLGFIPKGDKMFKFVLLLQHSMPTSVLSGAVANLRGCG-KESAA 412
L+++P GIG+V AD+L + + D M++FVL LQ+S P+++L GA+A+LRG KE++A
Sbjct: 370 LLILPCIGIGVVLLADRLHLLVEEDHMYRFVLSLQYSTPSAILLGAIASLRGYAVKEASA 429
Query: 413 ILFWVHIFAVFSMAGWIILYLTML 436
+LFW HI AV S++ ++I+Y +L
Sbjct: 430 LLFWQHICAVLSLSIYLIVYFRLL 453
>Os09g0554300 Auxin Efflux Carrier family protein
Length = 428
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 217/437 (49%), Gaps = 39/437 (8%)
Query: 26 LGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPSGRKLLNALVFSLLLPCLIFAQLGRS 85
L + A +PI +V ++ +G +AS +L S + +N +VF++ P L+FA L ++
Sbjct: 4 LSLLLVASMPIVQVLLIGVIGAFLASGYSKILTSSALRDMNKVVFTVFTPSLMFASLAKT 63
Query: 86 ITIDKIMEWWFIPANIALGAVSASLVGLIVALIVRPPYPYFKFTITHXXXXXXXXXPLVL 145
+T+ ++ WWF+P NI + + +G I I++PP + I L++
Sbjct: 64 VTLSDVISWWFMPVNIGITFIVGGTLGWIACKILKPPQHFRGMIIAFCSAGNLGNLLLII 123
Query: 146 ISALCRDQLNPFG-DSNKCTQDGNAYLSFGQWVGAIIVYTYVFKMLAPPPGQTFDSCDEE 204
+ A+C + NPFG D + C G +Y S +G + ++T+ + ++ G+ + +
Sbjct: 124 VPAVCDEDGNPFGKDRSLCRSRGLSYSSLSMALGGLFIWTHTYSLMQKA-GKMYHKMQSK 182
Query: 205 RDKLPIKAPNTMSSVAKYPSSAH------GNTHXXXXXXXXXXXXXXXGQDVHSLGSKIM 258
+ P S +P+ H G T + H+ +++
Sbjct: 183 SIQCPAD-----SDEEHHPAQGHDQVKLDGETAYADEEAALLVSAKLAPE--HNEENQME 235
Query: 259 IPIKGMVRFLQKK----------------QLLQPPIIASVLAITLGVVPFLKNLILTDDA 302
P+ R + K +L+ PP ++++L +G+VP+LK+L++ + A
Sbjct: 236 APLLTCEREIANKGGFWTNLKETVHQVVEELMAPPTVSAILGFVVGLVPWLKSLVIGNGA 295
Query: 303 PLFFLTDSCLILGEAMIPCILLAVGGNLVDGPGEGSRRLGVRTTV--AIIFARLILVPIA 360
PL + +S ++G IPCI L +GGNL +G R+ ++ TV I+ R ++ P+
Sbjct: 296 PLRVIQESLQLMGNGTIPCITLILGGNLT----QGLRKSVLKRTVIITIVCIRYVIQPLI 351
Query: 361 GIGIVSFADKLGFIPKGDKMFKFVLLLQHSMPTSVLSGAVANLRGCGKESAAILF-WVHI 419
G+ +V A +GF+P D ++++VL++Q ++P ++ G +A L G+E +++F W ++
Sbjct: 352 GMAVVHAAYGVGFLPH-DPLYRYVLMMQFALPPAMNIGTMAQLFDVGQEECSVIFLWTYL 410
Query: 420 FAVFSMAGWIILYLTML 436
A ++ W +++++L
Sbjct: 411 IAAIALTTWSTIFMSIL 427
>Os09g0555100 Auxin Efflux Carrier family protein
Length = 387
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 196/391 (50%), Gaps = 23/391 (5%)
Query: 26 LGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPSGRKLLNALVFSLLLPCLIFAQLGRS 85
L + A +P+ +V ++ +G +AS +L S +N +VF++ P L+FA L R+
Sbjct: 4 LALLLVASMPVVQVLLIGVVGAFLASGYSNILTSSALSDMNKVVFTVFTPSLMFASLART 63
Query: 86 ITIDKIMEWWFIPANIALGAVSASLVGLIVALIVRPPYPYFKFTITHXXXXXXXXXPLVL 145
+T ++ WWF+P NI + ++ +G I I++PP + I L++
Sbjct: 64 VTFSDVISWWFMPINIGITFMAGGTLGWIACRILKPPQHFRGMIIAFCSAGNLGNLLLIV 123
Query: 146 ISALCRDQLNPFG-DSNKCTQDGNAYLSFGQWVGAIIVYTYVFKML---------APPPG 195
+ A+C + NPFG DS++C G +Y S +G + ++T+ + ++ P
Sbjct: 124 VPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTHTYSLMKKKRDQMYHQPNST 183
Query: 196 QTFDSCDEERDKLPIKAPNTMS---SVAKYPSSAHGNTHXXXXXXXXXXXXXXXGQDVHS 252
Q D DEE KA + A P SA H V
Sbjct: 184 QCLDDSDEEHHSKKFKANGEAAYADEEATLPVSAKLAQHNEENQMEAPLLSCE--SKVAK 241
Query: 253 LGSKIMIPIKGMVRFLQKKQLLQPPIIASVLAITLGVVPFLKNLILTDDAPLFFLTDSCL 312
S +K + + ++L+ PP ++++L G+VP+LK+L++ D APL + DS
Sbjct: 242 KCSWTTTNLKDTIHHVV-EELMAPPTLSAILGFVFGLVPWLKSLVIGDGAPLRVIQDSIQ 300
Query: 313 ILGEAMIPCILLAVGGNLVDGPGEGSRRLGVRTTV--AIIFARLILVPIAGIGIVSFADK 370
++G IPC+ L +GGNL+ +G R+ ++ TV AI+ R +++P+ GI +V A
Sbjct: 301 LMGNGTIPCVTLILGGNLI----KGLRKSELKRTVIIAIVCIRYVILPLVGIAVVHGAYW 356
Query: 371 LGFIPKGDKMFKFVLLLQHSMPTSVLSGAVA 401
+GF+P D ++++VL++Q ++P ++ G ++
Sbjct: 357 VGFLPH-DPLYRYVLMMQFALPPAMTIGNLS 386
>Os09g0491740 Auxin Efflux Carrier family protein
Length = 379
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 179/369 (48%), Gaps = 5/369 (1%)
Query: 25 VLGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPSGRKLLNALVFSLLLPCLIFAQLGR 84
+L +F A +P+ + +V +G +A+ VG+L RK LN +VF + P L+ L +
Sbjct: 3 LLELFITACVPVLNMLLVTGVGSFLATDFVGILNKDARKYLNNIVFYVFNPSLVATYLAQ 62
Query: 85 SITIDKIMEWWFIPANIALGAVSASLVGLIVALIVRPPYPYFKFTITHXXXXXXXXXPLV 144
+IT++ + + WF+P NI L ++G IV + R P + L+
Sbjct: 63 TITLEGLAKLWFMPVNILLACTFGLILGWIVVHVTRAPARLRGLILGCCSAGNWGNIFLI 122
Query: 145 LISALCRDQLNPFGDSNKCTQDGNAYLSFGQWVGAIIVYTYVFKMLAPPPGQTFDSCDEE 204
+I ALC+++ +PFG + C G AY S +GA+ ++T + ++ + D +
Sbjct: 123 IIPALCKEKGSPFGAPDVCHTYGLAYSSLSMALGAVFLWTVAYNIMR-ATSKVADEGNAR 181
Query: 205 RDKLPIKAPNTMSSVAKYPSSAHGNTHXXXXXXXXXXXXXXXGQDVHSLGSKIMIPIKGM 264
+ + + + A + + N + + +L + + M
Sbjct: 182 TNDTKVSNSGSSTGTASEENLSIPNDNNQCTLPLISNSSVPSSKTKVTLSERAKRFVSSM 241
Query: 265 VRFLQKKQLLQPPIIASVLAITLGVVPFLKNLILTDDAPLFFLTDSCLILGEAMIPCILL 324
+ K++ P IA ++ +G P ++N I+ ++APL + +S ++G IP + L
Sbjct: 242 FGAIDFKKIFAPSTIAVIIGFIIGGTPLIRNAIIGENAPLRVIHESADLIGGGAIPSVTL 301
Query: 325 AVGGNLVDG-PGEGSRRLGVRTTVAIIFARLILVPIAGIGIVSFADKLGFIPKGDKMFKF 383
+GGNL++G GE S + V +V ++ R IL+P G +V A LG I D +++F
Sbjct: 302 IMGGNLLNGLRGEASVQPSVIASVIVV--RYILLPSLGTLLVKSAVHLGLI-HPDPLYQF 358
Query: 384 VLLLQHSMP 392
+LLLQ+++P
Sbjct: 359 ILLLQYAVP 367
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.144 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,366,144
Number of extensions: 526381
Number of successful extensions: 1114
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1101
Number of HSP's successfully gapped: 9
Length of query: 437
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 333
Effective length of database: 11,605,545
Effective search space: 3864646485
Effective search space used: 3864646485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)