Os01g0818000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0818000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Auxin Efflux Carrier family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.65	(0.0276)	R²	:	0.776
β₁	:	-0.568	(0.1)	R²_dD	:	0.0162	R²_D	:	0.00317
β₂	:	2.61	(0.069)	R²_dC	:	0.715	R²_C	:	0.708
β₃	:	0.00338	(0.111)	R²_dE	:	1.26e-05	R²_E	:	-0.00151
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	3.81	(0.43)	R²_dD*E	:	0.0461	R²_D*E	:	0.0443
γ₁	:	-0.335	(0.0592)	R²_dN8	:	0.0209	R²_N8	:	-0.0052
σ	:	0.503
deviance	:	116.69
__

_____

C
peak time of C	:	7.77
E
wheather	:	radiation
threshold	:	10
memory length	:	1566
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
115.02	0.504	5.65	-0.544	2.61	-0.0338	-0.966	3.69	-0.331	7.78	9.992	1481	--	--
133.76	0.543	5.68	-0.42	2.68	0.225	-0.978	--	-0.312	8.08	20.07	1745	--	--
116.69	0.503	5.65	-0.568	2.61	0.00338	--	3.81	-0.335	7.77	10	1566	--	--
136.31	0.544	5.67	-0.384	2.59	0.311	--	--	-0.294	7.96	40.08	1832	--	--
448.17	0.991	5.73	-0.302	--	-0.746	--	0.965	-0.201	--	9.7	1512	--	--
135.93	0.547	5.69	-0.454	2.61	--	-1.08	--	-0.318	7.87	--	--	--	--
139.31	0.553	5.69	-0.482	2.61	--	--	--	-0.317	7.87	--	--	--	--
415.39	0.953	5.75	-0.398	--	-0.94	--	--	-0.256	--	5.18	1554	--	--
139.11	0.549	5.66	--	2.49	0.414	--	--	-0.158	7.89	40	2433	--	--
510.41	1.06	5.75	-0.453	--	--	--	--	-0.282	--	--	--	--	--
145.45	0.564	5.67	--	2.61	--	--	--	-0.264	7.88	--	--	--	--
357.28	0.88	5.57	--	--	1.58	--	--	0.0645	--	40.07	849	--	--
515.83	1.06	5.74	--	--	--	--	--	-0.232	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	109.45	humidity	80.0	43200	> th	dose dependent	rect.	10	1
2	109.58	wind	1.0	14400	< th	dose independent	rect.	19	11
3	109.59	precipitation	0.1	14400	< th	dose independent	rect.	13	1
4	109.59	precipitation	0.1	14400	< th	dose dependent	rect.	13	1
5	109.78	precipitation	0.1	14400	> th	dose independent	rect.	13	1
6	109.80	wind	1.0	14400	> th	dose independent	rect.	19	11
8	110.36	humidity	90.0	14400	> th	dose independent	rect.	13	15
9	110.37	humidity	90.0	43200	< th	dose independent	rect.	9	1
10	110.37	humidity	90.0	14400	> th	dose independent	rect.	15	13
12	110.39	radiation	40.0	4320	< th	dose dependent	rect.	18	5
23	110.51	humidity	80.0	14400	< th	dose independent	rect.	14	2
25	110.53	humidity	90.0	43200	< th	dose independent	rect.	17	3
29	110.55	humidity	90.0	14400	> th	dose independent	sin	15	NA
33	110.58	humidity	90.0	43200	< th	dose independent	rect.	19	1
36	110.60	radiation	40.0	4320	< th	dose dependent	rect.	18	2
38	110.64	wind	1.0	14400	> th	dose independent	rect.	21	9
44	110.67	humidity	90.0	43200	> th	dose independent	rect.	9	1
54	110.74	humidity	90.0	14400	> th	dose independent	rect.	13	19
60	110.77	precipitation	0.1	14400	> th	dose dependent	rect.	13	1
103	111.08	humidity	70.0	14400	> th	dose dependent	rect.	14	1
104	111.08	radiation	30.0	4320	< th	dose dependent	rect.	18	8
108	111.11	humidity	80.0	14400	> th	dose independent	rect.	14	2
136	111.19	humidity	90.0	43200	> th	dose independent	rect.	19	1
149	111.26	humidity	90.0	14400	> th	dose independent	rect.	5	23
162	111.29	humidity	90.0	14400	> th	dose independent	rect.	7	23
165	111.30	humidity	90.0	14400	> th	dose independent	rect.	3	23
172	111.32	humidity	90.0	14400	> th	dose independent	no	NA	NA
176	111.32	humidity	90.0	14400	> th	dose independent	rect.	23	23
177	111.33	humidity	90.0	14400	> th	dose independent	rect.	1	23
190	111.37	precipitation	0.1	43200	< th	dose independent	rect.	19	1
192	111.37	precipitation	0.1	43200	< th	dose dependent	rect.	19	1
203	111.42	humidity	90.0	14400	> th	dose independent	rect.	21	23
204	111.42	temperature	30.0	14400	< th	dose dependent	rect.	13	2
217	111.47	humidity	90.0	14400	> th	dose independent	rect.	19	23
233	111.57	precipitation	0.1	43200	> th	dose independent	rect.	19	1
249	111.65	humidity	90.0	43200	> th	dose independent	rect.	16	6
251	111.66	humidity	90.0	43200	> th	dose independent	rect.	17	4
269	111.74	humidity	90.0	14400	< th	dose independent	rect.	13	13
295	111.83	humidity	80.0	43200	> th	dose dependent	rect.	17	1
326	111.97	humidity	90.0	14400	< th	dose independent	sin	16	NA
330	111.97	humidity	80.0	14400	> th	dose dependent	rect.	13	6
346	112.01	humidity	90.0	14400	> th	dose dependent	rect.	13	14
361	112.06	humidity	90.0	14400	> th	dose dependent	rect.	15	12
369	112.08	humidity	90.0	14400	> th	dose dependent	rect.	4	22
376	112.10	humidity	90.0	14400	< th	dose independent	rect.	8	20
377	112.10	humidity	90.0	14400	> th	dose dependent	rect.	1	21
382	112.11	humidity	90.0	14400	> th	dose dependent	rect.	12	22
383	112.12	humidity	90.0	14400	> th	dose dependent	rect.	12	20
387	112.13	humidity	90.0	14400	> th	dose dependent	sin	15	NA
412	112.17	temperature	25.0	14400	< th	dose independent	rect.	17	1
429	112.20	humidity	80.0	43200	> th	dose independent	rect.	10	5
430	112.20	humidity	80.0	43200	> th	dose independent	rect.	10	7
435	112.20	temperature	15.0	14400	> th	dose dependent	rect.	7	1
466	112.25	temperature	30.0	14400	< th	dose dependent	rect.	7	1
488	112.28	humidity	90.0	14400	< th	dose independent	rect.	13	21
504	112.30	humidity	90.0	14400	> th	dose dependent	rect.	9	23
509	112.31	humidity	90.0	14400	> th	dose dependent	no	NA	NA
512	112.31	humidity	90.0	14400	> th	dose dependent	rect.	15	23
518	112.32	temperature	20.0	14400	> th	dose dependent	rect.	14	1
523	112.33	radiation	1.0	14400	< th	dose independent	rect.	7	5
533	112.34	wind	3.0	43200	< th	dose independent	rect.	8	1
539	112.35	radiation	1.0	4320	> th	dose dependent	rect.	18	1
553	112.36	temperature	20.0	14400	> th	dose independent	rect.	18	1
559	112.36	humidity	90.0	14400	< th	dose independent	rect.	24	22
620	112.43	temperature	15.0	14400	> th	dose dependent	rect.	24	1
627	112.43	humidity	90.0	14400	> th	dose dependent	rect.	19	23
643	112.46	radiation	1.0	14400	> th	dose independent	rect.	7	5
645	112.46	temperature	25.0	14400	< th	dose independent	rect.	6	12
669	112.49	temperature	20.0	14400	< th	dose independent	rect.	18	7
712	112.52	temperature	30.0	14400	< th	dose dependent	rect.	24	17
715	112.53	humidity	90.0	14400	< th	dose independent	no	NA	NA
720	112.53	temperature	25.0	14400	> th	dose independent	rect.	6	12
735	112.54	temperature	30.0	14400	< th	dose dependent	rect.	24	1
740	112.55	temperature	20.0	14400	< th	dose independent	rect.	20	1
751	112.56	radiation	10.0	4320	< th	dose independent	rect.	17	2
752	112.56	temperature	20.0	14400	< th	dose independent	rect.	20	3
756	112.56	radiation	10.0	4320	< th	dose independent	rect.	17	8
759	112.56	temperature	25.0	14400	> th	dose independent	rect.	6	10
767	112.57	radiation	10.0	4320	< th	dose independent	rect.	17	6
768	112.57	humidity	80.0	43200	< th	dose independent	rect.	10	7
774	112.57	temperature	30.0	14400	< th	dose dependent	rect.	6	12
785	112.58	precipitation	0.1	43200	> th	dose dependent	rect.	19	1
824	112.60	humidity	80.0	43200	> th	dose dependent	rect.	9	9
829	112.60	temperature	30.0	14400	< th	dose dependent	rect.	12	15
871	112.63	radiation	1.0	14400	< th	dose independent	rect.	7	2
880	112.63	humidity	90.0	14400	> th	dose dependent	rect.	6	2
894	112.64	atmosphere	1005.0	43200	< th	dose independent	rect.	18	1
909	112.64	temperature	30.0	14400	< th	dose dependent	rect.	12	21
937	112.66	temperature	30.0	14400	< th	dose dependent	sin	0	NA
947	112.66	temperature	30.0	14400	< th	dose dependent	rect.	7	21
998	112.69	humidity	90.0	14400	< th	dose independent	rect.	21	23