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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0555100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Auxin Efflux Carrier family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.65 (0.674) R2 : 0.421
β1 : 22.5 (6.23) R2dD : 3.8 R2D : -6.63
β2 : 1.07 (0.279) R2dC : 0.0196 R2C : -0.909
β3 : -22.5 (5.2) R2dE : 7.05 R2E : -9
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 232 (49.5) R2dD*E : 13.4 R2D*E : -8.65
γ1 : -1.69 (0.249) R2dN8 : 0.0813 R2N8 : -1.18
σ : 2.14
deviance : 2112.07
__
_____
C
peak time of C : 1.33
E
wheather : humidity
threshold : 49.19
memory length : 1370
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 1.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2112.02 2.16 2.65 22.5 1.07 -22.5 -0.162 232 -1.69 1.31 49.18 1369 15.9 1.05
2332.45 2.27 5.81 -6.25 1.57 -1.81 1.02 -- -2 2.49 70.48 225 19.3 1.36
2112.07 2.14 2.65 22.5 1.07 -22.5 -- 232 -1.69 1.33 49.19 1370 15.9 1.07
2325.19 2.25 5.83 -6.29 1.58 -2.4 -- -- -2.04 2.29 69.51 258 19.4 0.855
2177.73 2.17 2.64 22.3 -- -22.5 -- 234 -1.63 -- 49.56 1263 15.9 1.05
2346.31 2.27 5.81 -6.27 1.59 -- 1.12 -- -1.98 2.7 -- -- -- --
2350.59 2.27 5.81 -6.3 1.59 -- -- -- -1.99 2.58 -- -- -- --
2447.69 2.31 5.83 -6.26 -- -0.899 -- -- -2.05 -- 93.55 47520 11.5 1.7
3363.25 2.7 5.67 -- 1.45 -2.71 -- -- -1.32 2.19 70.81 144 19.6 0.1
2498.6 2.34 5.8 -6.23 -- -- -- -- -1.95 -- -- -- -- --
3395.68 2.73 5.65 -- 1.47 -- -- -- -1.28 2.53 -- -- -- --
2626 2.39 5.41 -- -- -5.64 -- -- -0.224 -- 87.26 47520 13.4 0.000732
3522.23 2.77 5.65 -- -- -- -- -- -1.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2116.77 humidity 50 1440 < th dose independent rect. 16 1
2 2117.38 humidity 50 1440 < th dose dependent rect. 16 1
3 2124.79 temperature 30 720 > th dose dependent rect. 18 1
17 2125.27 wind 1 90 < th dose dependent rect. 4 1
18 2127.41 wind 1 90 < th dose independent rect. 4 1
19 2130.98 humidity 50 1440 > th dose independent rect. 16 1
50 2161.29 temperature 25 720 > th dose dependent rect. 21 2
56 2169.13 humidity 60 4320 > th dose independent rect. 17 10
58 2169.35 wind 9 43200 > th dose dependent rect. 13 1
59 2169.37 humidity 60 4320 > th dose independent rect. 17 8
62 2169.59 humidity 60 4320 > th dose independent rect. 17 3
63 2169.61 humidity 60 4320 > th dose independent rect. 17 6
66 2169.78 humidity 60 4320 > th dose independent rect. 17 15
72 2170.80 wind 1 43200 < th dose dependent rect. 2 1
74 2171.09 humidity 60 4320 < th dose dependent rect. 16 17
75 2171.48 humidity 70 720 < th dose dependent rect. 18 1
90 2172.87 humidity 80 14400 > th dose independent rect. 23 1
92 2174.17 humidity 60 4320 < th dose dependent rect. 16 4
118 2174.89 wind 9 43200 > th dose independent rect. 13 1
120 2175.09 humidity 90 90 > th dose dependent rect. 4 1
124 2177.39 temperature 30 720 < th dose independent rect. 18 8
126 2177.91 wind 9 43200 < th dose independent rect. 13 1
129 2179.11 temperature 30 720 > th dose independent rect. 18 1
143 2179.76 humidity 70 720 < th dose independent rect. 17 3
155 2180.04 humidity 70 720 > th dose independent rect. 18 13
157 2180.32 temperature 30 43200 > th dose dependent rect. 8 1
171 2180.43 wind 9 43200 > th dose dependent rect. 13 20
175 2181.49 humidity 70 720 > th dose independent rect. 18 6
177 2181.71 humidity 70 720 > th dose independent rect. 18 8
179 2182.03 humidity 50 4320 < th dose independent sin 11 NA
197 2183.27 humidity 50 4320 < th dose independent rect. 12 5
198 2183.35 wind 9 43200 > th dose independent rect. 13 21
215 2183.72 humidity 80 14400 < th dose independent rect. 22 1
216 2183.90 humidity 70 4320 < th dose dependent rect. 18 1
237 2185.15 humidity 50 4320 < th dose independent rect. 15 20
252 2185.31 humidity 90 90 > th dose independent rect. 4 1
267 2185.90 humidity 50 4320 > th dose independent sin 11 NA
310 2187.82 wind 9 14400 > th dose dependent rect. 17 22
313 2188.03 wind 9 43200 > th dose dependent rect. 9 11
315 2188.21 temperature 30 43200 > th dose independent rect. 8 1
331 2188.29 humidity 90 4320 > th dose dependent rect. 3 1
334 2188.77 wind 9 43200 < th dose independent rect. 13 21
355 2189.37 humidity 90 4320 > th dose dependent rect. 2 3
356 2189.42 humidity 50 4320 > th dose independent rect. 15 20
358 2189.66 wind 9 43200 > th dose dependent sin 21 NA
380 2190.93 humidity 50 4320 < th dose independent rect. 15 23
401 2191.39 wind 1 14400 > th dose independent rect. 1 2
421 2192.38 wind 9 43200 > th dose dependent rect. 9 7
433 2192.62 wind 9 14400 < th dose independent rect. 18 21
463 2193.12 wind 9 43200 > th dose dependent rect. 13 7
476 2193.36 temperature 30 43200 < th dose independent rect. 3 6
480 2193.51 wind 9 14400 > th dose dependent rect. 20 19
490 2193.80 temperature 20 90 > th dose dependent rect. 4 1
522 2194.16 wind 9 14400 < th dose independent rect. 20 19
528 2194.33 wind 9 43200 > th dose independent rect. 6 14
531 2194.37 temperature 30 43200 < th dose independent rect. 20 13
551 2194.46 temperature 30 43200 < th dose independent rect. 8 1
567 2195.08 wind 1 43200 < th dose dependent rect. 8 4
570 2195.13 humidity 50 4320 > th dose independent rect. 13 4
598 2195.49 wind 9 14400 > th dose dependent rect. 12 9
640 2195.84 wind 9 43200 > th dose independent rect. 23 21
644 2195.95 humidity 90 14400 < th dose independent rect. 1 4
667 2196.24 temperature 20 90 > th dose independent rect. 4 1
670 2196.29 wind 3 43200 > th dose dependent rect. 13 1
698 2196.55 wind 9 14400 > th dose independent rect. 18 21
703 2196.60 wind 7 14400 > th dose independent rect. 15 1
707 2196.78 wind 9 43200 > th dose independent rect. 2 18
714 2196.89 wind 1 14400 < th dose independent rect. 1 2
719 2196.97 wind 9 43200 > th dose dependent rect. 13 15
747 2197.55 wind 9 43200 > th dose independent rect. 15 23
813 2198.30 wind 7 43200 > th dose dependent rect. 2 17
816 2198.42 humidity 80 43200 < th dose dependent rect. 21 3
818 2198.46 wind 9 14400 > th dose independent rect. 20 19
824 2198.55 wind 7 43200 > th dose dependent rect. 23 20
851 2198.85 wind 5 43200 > th dose dependent rect. 15 1
868 2198.87 humidity 50 4320 < th dose independent no NA NA