BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0455700 Os05g0455700|AK070824
(301 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0455700 Uracil phosphoribosyl transferase family protein 459 e-129
Os08g0530000 Similar to Uridine kinase-like protein 86 3e-17
Os09g0505800 Similar to Uridine kinase-like protein 86 3e-17
Os11g0265000 Uridine kinase family protein 80 1e-15
Os02g0273000 Similar to Uridine kinase-like protein 80 2e-15
AK119843 76 3e-14
>Os05g0455700 Uracil phosphoribosyl transferase family protein
Length = 301
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/254 (91%), Positives = 232/254 (91%)
Query: 48 RFAATAPILRLVQXXXXXXXXXXXXXXXXXXXXXXSPSSGGQMLVFVPPHPLIKHWVSVL 107
RFAATAPILRLVQ SPSSGGQMLVFVPPHPLIKHWVSVL
Sbjct: 48 RFAATAPILRLVQRRPRAPLTAARAASPDAATGARSPSSGGQMLVFVPPHPLIKHWVSVL 107
Query: 108 RNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVAVSSVEFIDPREPVMVVPI 167
RNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVAVSSVEFIDPREPVMVVPI
Sbjct: 108 RNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVAVSSVEFIDPREPVMVVPI 167
Query: 168 LRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLAT 227
LRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLAT
Sbjct: 168 LRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLAT 227
Query: 228 GGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTIDSEVDERGFI 287
GGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTIDSEVDERGFI
Sbjct: 228 GGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTIDSEVDERGFI 287
Query: 288 VPGLGDAGDRSFAT 301
VPGLGDAGDRSFAT
Sbjct: 288 VPGLGDAGDRSFAT 301
>Os08g0530000 Similar to Uridine kinase-like protein
Length = 491
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 11/205 (5%)
Query: 97 HPLIKHWVSVLRNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVAVSSVEFI 156
H LI+ R+ TP +F S L RL++ E LP +I TP S+ +
Sbjct: 297 HTLIRD-----RDIATPDFVFYSD--RLIRLVV-EHGLGHLPFTEKQIVTPTG-STYMGV 347
Query: 157 DPREPVMVVPILRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGT 216
D + + V I+R+G +M + K + + RD + Q IY + P I E
Sbjct: 348 DFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGQQLIY-HKFPLDIAE-R 405
Query: 217 RVLVVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGT 276
VL++DP+L TG + AI+LL+ GV ++I ++ ++AP + + +FP L + T
Sbjct: 406 HVLLMDPVLGTGNSANQAIELLISSGVPEERIMFLNLISAPEGVHCVCKRFPRLKIVTSE 465
Query: 277 IDSEVDERGFIVPGLGDAGDRSFAT 301
I++ ++E ++PGLG+ GDR F T
Sbjct: 466 IETGLNEEYRVIPGLGEYGDRYFGT 490
>Os09g0505800 Similar to Uridine kinase-like protein
Length = 496
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 15/207 (7%)
Query: 97 HPLIKHWVSVLRNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVA--VSSVE 154
H LI+ R+ TP +F S L RL++ E LP +I TP VE
Sbjct: 301 HTLIRD-----RDITTPDFVFYSD--RLIRLVV-EHGLGHLPFTEKQIITPTGSIYMGVE 352
Query: 155 FIDPREPVMVVPILRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPE 214
F + + V I+R+G +M + K + + R + Q IY + LP I E
Sbjct: 353 FC---KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRVGDNGQQLIY-HKLPMDIAE 408
Query: 215 GTRVLVVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYT 274
VL++DP+L TG + AI+LL+ +GV ++I ++ ++AP +Q + +FP L + T
Sbjct: 409 -RHVLLLDPVLGTGNSANQAIELLIRKGVPEERIIFLNLISAPEGIQCVCKRFPRLKIVT 467
Query: 275 GTIDSEVDERGFIVPGLGDAGDRSFAT 301
ID+ + E ++PGLG+ GDR F T
Sbjct: 468 SEIDTGLSEEYRVIPGLGEYGDRYFGT 494
>Os11g0265000 Uridine kinase family protein
Length = 491
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 104/204 (50%), Gaps = 8/204 (3%)
Query: 100 IKHWVSVLRNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVA--VSSVEFID 157
I+ +++R+ T F L RL++ E LP ++ TP + VEF
Sbjct: 274 IRGMHTIIRDAATTTHDFIFYADRLIRLVV-EHGLGHLPFKEKQVITPTGSVYTGVEF-- 330
Query: 158 PREPVMVVPILRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTR 217
+ + + ++R+G +M + K + + R+ + + IY +N+P I
Sbjct: 331 -SKRLCGISVIRSGESMENALRACCKGIKIGKILIHREGDNGKQLIY-HNVPKDIAN-RH 387
Query: 218 VLVVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTI 277
VL++DP+L TG + V AI LL+++GV I ++ ++AP + +S +FP + + T I
Sbjct: 388 VLLLDPILGTGNSAVQAISLLLKKGVQETNIIFLNLISAPQGVHVVSKRFPRVKIVTSEI 447
Query: 278 DSEVDERGFIVPGLGDAGDRSFAT 301
D +++ ++PG+G+ GDR F T
Sbjct: 448 DFGLNDDFRVIPGMGEFGDRYFGT 471
>Os02g0273000 Similar to Uridine kinase-like protein
Length = 489
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 104/204 (50%), Gaps = 8/204 (3%)
Query: 100 IKHWVSVLRNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVA--VSSVEFID 157
I+ +++R+ T F L RL++ E LP ++ TP + VEF
Sbjct: 272 IRGMHTIIRDAATTTHDFIFYADRLIRLVV-EHGLGHLPFKEKQVITPTGSVYTGVEF-- 328
Query: 158 PREPVMVVPILRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTR 217
+ + + ++R+G +M + K + + R+ + + IY +NLP I
Sbjct: 329 -SKRLCGISVIRSGESMENALRACCKGIKIGKILIHREGDNGKQLIY-HNLPKDIAN-RH 385
Query: 218 VLVVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTI 277
VL++DP+L TG + V AI LL+++GV I ++ ++AP + +S +FP + + T I
Sbjct: 386 VLLLDPILGTGNSAVQAISLLLKKGVQETNIIFLNLISAPQGVHVVSKRFPRVKIVTSEI 445
Query: 278 DSEVDERGFIVPGLGDAGDRSFAT 301
+ +++ ++PG+G+ GDR F T
Sbjct: 446 EFGLNDDFRVIPGMGEFGDRYFGT 469
>AK119843
Length = 752
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 101/199 (50%), Gaps = 8/199 (4%)
Query: 105 SVLRNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVA--VSSVEFIDPREPV 162
+++R+ T F L RL++ E LP ++ TP + VEF + +
Sbjct: 540 TIIRDAATTTHDFIFYADRLIRLVV-EHGLGHLPFKEKQVITPTGSVYTGVEF---SKRL 595
Query: 163 MVVPILRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVD 222
+ ++R+G +M + K + + R+ + + IY +NLP I VL +D
Sbjct: 596 CGISVIRSGESMENALRACCKGIKIGKILIHREGDNGKQLIY-HNLPKDIAN-RHVLSLD 653
Query: 223 PMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTIDSEVD 282
P+L TG + V AI LL+++GV I ++ ++AP + +S +FP + + T I+ ++
Sbjct: 654 PILGTGNSAVQAISLLLKKGVQETNIIFLNLISAPQGVHVVSKRFPRVKIVTSEIEFGLN 713
Query: 283 ERGFIVPGLGDAGDRSFAT 301
+ ++PG+G+ GDR F T
Sbjct: 714 DDFRVIPGMGEFGDRYFGT 732
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,257,438
Number of extensions: 312833
Number of successful extensions: 853
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 6
Length of query: 301
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 201
Effective length of database: 11,814,401
Effective search space: 2374694601
Effective search space used: 2374694601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)