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Os08g0530000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Uridine kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0222) R2 : 0.341
β1 : -1 (0.0814) R2dD : 0.228 R2D : 0.0913
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.54 (0.0475) R2dN8 : 0.25 R2N8 : 0.114
σ : 0.417
deviance : 79.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.85 0.363 12.2 -1.03 0.522 1.74 -0.274 4.69 -0.541 18.1 19.21 4630 -- --
64.2 0.376 12.1 -1.06 0.522 -0.514 -0.172 -- -0.55 18.3 19.21 4630 -- --
59.56 0.359 12.2 -0.957 0.519 2.01 -- 5.18 -0.53 18.4 19.26 6014 -- --
63.7 0.372 12.1 -1.13 0.522 -0.67 -- -- -0.564 18.3 15.44 4855 -- --
73.47 0.399 12.2 -0.954 -- 2.18 -- 5.58 -0.54 -- 19.06 5859 -- --
65.45 0.379 12.1 -0.991 0.524 -- -0.218 -- -0.527 18.1 -- -- -- --
65.54 0.379 12.1 -0.989 0.524 -- -- -- -0.528 18.3 -- -- -- --
77.91 0.413 12.1 -1.07 -- -0.359 -- -- -0.587 -- 51.14 33002 -- --
81.18 0.42 12.1 -- 0.562 0.79 -- -- -0.272 18.6 21.89 3550 -- --
79.77 0.417 12.1 -1 -- -- -- -- -0.54 -- -- -- -- --
91.34 0.447 12.1 -- 0.538 -- -- -- -0.418 18.2 -- -- -- --
81.66 0.421 12 -- -- 0.799 -- -- -0.189 -- 52.24 47520 -- --
106.33 0.481 12.1 -- -- -- -- -- -0.428 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.00 humidity 90 720 < th dose independent rect. 8 4
5 57.95 temperature 15 270 > th dose independent rect. 23 14
9 58.18 humidity 90 270 < th dose independent rect. 8 7
15 58.35 radiation 40 270 < th dose independent rect. 3 13
19 58.42 humidity 90 14400 < th dose dependent rect. 5 1
25 58.52 radiation 40 4320 > th dose independent rect. 15 1
46 58.62 humidity 90 10 < th dose independent rect. 10 8
47 58.65 humidity 60 270 > th dose independent rect. 15 17
48 58.67 atmosphere 1015 720 < th dose independent rect. 24 11
52 58.72 temperature 30 270 < th dose independent rect. 15 17
57 58.80 wind 1 43200 < th dose dependent rect. 7 3
59 58.83 humidity 80 14400 > th dose independent rect. 6 1
60 58.85 humidity 80 14400 < th dose independent rect. 6 1
66 58.89 atmosphere 1015 720 < th dose independent rect. 23 13
68 58.90 humidity 50 270 > th dose independent rect. 14 9
72 58.91 humidity 50 270 > th dose independent rect. 3 14
73 58.92 radiation 30 270 < th dose independent rect. 3 10
74 58.92 wind 3 14400 < th dose dependent rect. 24 2
75 58.92 humidity 50 270 > th dose dependent rect. 3 14
77 58.93 humidity 90 270 < th dose independent rect. 24 15
78 58.95 wind 9 43200 < th dose independent rect. 11 3
79 58.95 radiation 1 720 > th dose independent rect. 6 6
83 58.96 humidity 90 720 < th dose dependent rect. 10 1
84 58.97 humidity 60 90 > th dose independent rect. 5 14
85 58.97 radiation 40 270 < th dose dependent rect. 3 8
94 59.03 humidity 50 43200 < th dose dependent rect. 4 9
95 59.03 humidity 50 43200 < th dose dependent rect. 21 16
97 59.04 humidity 50 43200 < th dose dependent rect. 11 2
98 59.04 wind 1 43200 < th dose dependent rect. 6 7
99 59.04 humidity 50 43200 < th dose dependent rect. 6 7
113 59.05 humidity 50 90 > th dose dependent rect. 5 14
115 59.06 temperature 15 270 > th dose independent rect. 8 7
118 59.07 wind 9 43200 > th dose dependent rect. 11 4
128 59.09 humidity 50 270 > th dose dependent rect. 3 10
130 59.10 radiation 10 10 < th dose dependent sin 10 NA
144 59.11 humidity 50 43200 < th dose dependent sin 7 NA
149 59.12 humidity 60 14400 > th dose independent rect. 15 1
150 59.12 wind 9 43200 > th dose independent rect. 12 3
155 59.13 wind 1 720 > th dose independent rect. 9 8
192 59.19 humidity 90 720 > th dose dependent rect. 8 6
195 59.20 atmosphere 1015 720 < th dose independent rect. 24 18
197 59.21 temperature 30 270 < th dose independent rect. 14 9
215 59.22 wind 1 43200 < th dose independent rect. 6 5
230 59.24 radiation 30 14400 < th dose independent rect. 17 8
239 59.25 wind 1 43200 < th dose dependent rect. 5 15
250 59.27 humidity 50 43200 > th dose dependent rect. 5 1
271 59.28 wind 1 43200 < th dose dependent rect. 5 13
275 59.29 wind 1 43200 < th dose independent rect. 5 13
280 59.29 wind 1 1440 < th dose dependent rect. 10 4
289 59.29 wind 1 43200 < th dose dependent rect. 5 18
296 59.30 wind 1 1440 < th dose independent rect. 11 3
300 59.30 atmosphere 1015 720 < th dose independent rect. 24 20
304 59.31 wind 1 1440 > th dose independent rect. 13 1
305 59.31 wind 9 43200 < th dose independent rect. 13 1
310 59.31 humidity 50 43200 < th dose dependent no NA NA
322 59.31 humidity 50 43200 < th dose dependent rect. 4 18
350 59.31 humidity 50 43200 < th dose dependent rect. 10 23
437 59.35 wind 1 1440 < th dose independent rect. 13 1
439 59.35 humidity 90 720 > th dose dependent rect. 8 1
452 59.36 temperature 10 270 > th dose dependent rect. 23 15
461 59.37 wind 1 43200 < th dose independent rect. 7 3
463 59.37 temperature 15 720 > th dose independent rect. 5 7
466 59.37 wind 1 1440 < th dose dependent rect. 12 2
486 59.38 humidity 90 1440 > th dose dependent rect. 8 4
489 59.38 wind 3 14400 < th dose dependent rect. 18 14
504 59.40 wind 1 1440 > th dose independent rect. 11 3
522 59.42 humidity 50 43200 < th dose independent sin 8 NA
524 59.42 wind 1 43200 < th dose independent rect. 5 8
547 59.44 radiation 1 720 > th dose dependent rect. 10 1
554 59.45 wind 9 270 < th dose independent rect. 23 15
555 59.45 wind 1 43200 < th dose independent rect. 5 18
558 59.46 humidity 80 14400 > th dose independent rect. 2 5
566 59.46 temperature 10 10 > th dose dependent rect. 24 18
582 59.48 humidity 50 43200 < th dose independent rect. 18 19
583 59.48 wind 3 14400 < th dose dependent sin 11 NA
585 59.49 temperature 15 720 > th dose independent rect. 9 2
592 59.50 humidity 50 43200 > th dose independent sin 8 NA
593 59.50 humidity 80 14400 < th dose independent rect. 2 5
603 59.51 radiation 40 10 < th dose independent rect. 5 19
606 59.51 humidity 60 43200 < th dose dependent rect. 8 1
639 59.53 wind 3 14400 < th dose dependent rect. 22 6
653 59.54 humidity 50 43200 < th dose independent rect. 16 23
667 59.55 wind 3 14400 < th dose dependent rect. 22 10
675 59.56 humidity 50 43200 > th dose independent rect. 16 23
680 59.56 humidity 60 43200 < th dose dependent rect. 20 14
687 59.57 humidity 50 43200 < th dose independent rect. 4 9
700 59.58 wind 1 43200 > th dose independent rect. 5 12
703 59.58 humidity 70 30 > th dose independent rect. 5 19
705 59.58 humidity 50 43200 > th dose independent rect. 18 23
707 59.58 humidity 90 90 < th dose dependent rect. 10 11
710 59.58 wind 3 14400 < th dose dependent rect. 23 15
732 59.60 temperature 15 270 > th dose independent rect. 8 19
748 59.61 wind 1 43200 > th dose independent rect. 5 14
750 59.61 temperature 15 270 > th dose independent rect. 9 17
751 59.61 wind 1 43200 < th dose independent rect. 4 22
800 59.64 humidity 50 43200 > th dose independent no NA NA
805 59.64 humidity 50 43200 > th dose independent rect. 4 18
809 59.64 humidity 50 43200 > th dose independent rect. 18 19
827 59.64 humidity 50 43200 > th dose independent rect. 10 23
836 59.65 humidity 50 43200 < th dose independent no NA NA
845 59.65 humidity 50 43200 < th dose independent rect. 3 19
872 59.65 humidity 50 43200 < th dose independent rect. 10 23
881 59.66 humidity 90 270 < th dose independent sin 2 NA
887 59.66 humidity 50 43200 > th dose independent rect. 4 13
892 59.66 humidity 50 43200 > th dose independent rect. 23 18
917 59.67 temperature 20 270 > th dose independent sin 6 NA
919 59.67 humidity 60 14400 < th dose independent rect. 15 1
971 59.67 humidity 50 43200 < th dose independent rect. 14 23