Os09g0505800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uridine kinase-like protein.
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Os09g0505800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uridine kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.29 | 0.295 | 11.8 | -0.825 | 1.12 | 0.903 | 0.526 | -0.452 | 0.134 | 7.56 | 12.34 | 268 | -- | -- |
| 39.98 | 0.294 | 11.8 | -0.838 | 1.07 | 1.04 | 0.682 | -- | 0.137 | 8.21 | 10.63 | 284 | -- | -- |
| 40.02 | 0.295 | 11.8 | -0.805 | 1.14 | 0.903 | -- | -0.528 | 0.135 | 7.52 | 12.79 | 257 | -- | -- |
| 41.24 | 0.299 | 11.8 | -0.818 | 1.12 | 0.903 | -- | -- | 0.128 | 7.6 | 11.4 | 267 | -- | -- |
| 46 | 0.316 | 11.8 | -0.796 | -- | 1.76 | -- | -0.543 | 0.196 | -- | 4.071 | 644 | -- | -- |
| 48.5 | 0.326 | 11.8 | -0.849 | 1.56 | -- | 0.109 | -- | 0.0904 | 5.09 | -- | -- | -- | -- |
| 48.53 | 0.326 | 11.8 | -0.849 | 1.57 | -- | -- | -- | 0.0898 | 5.09 | -- | -- | -- | -- |
| 45.25 | 0.313 | 11.8 | -0.759 | -- | 1.81 | -- | -- | 0.186 | -- | 3.91 | 652 | -- | -- |
| 58.06 | 0.355 | 11.8 | -- | 1.14 | 0.889 | -- | -- | 0.231 | 7.39 | 17.02 | 242 | -- | -- |
| 177.07 | 0.622 | 11.8 | -0.793 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 67.52 | 0.384 | 11.8 | -- | 1.55 | -- | -- | -- | 0.184 | 5.1 | -- | -- | -- | -- |
| 60.16 | 0.361 | 11.8 | -- | -- | 1.83 | -- | -- | 0.265 | -- | 3.104 | 664 | -- | -- |
| 193.64 | 0.65 | 11.8 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.51 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 7 | 37.66 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 10 | 37.70 | humidity | 90 | 30 | < th | dose dependent | rect. | 8 | 11 |
| 18 | 38.04 | humidity | 50 | 90 | > th | dose dependent | sin | 1 | NA |
| 19 | 38.10 | humidity | 90 | 90 | < th | dose dependent | sin | 1 | NA |
| 33 | 38.40 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 39 | 38.46 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 47 | 38.56 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 11 |
| 63 | 38.70 | humidity | 70 | 270 | > th | dose independent | rect. | 3 | 13 |
| 74 | 38.74 | humidity | 90 | 90 | < th | dose dependent | rect. | 24 | 19 |
| 78 | 38.76 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 12 |
| 79 | 38.76 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 89 | 38.79 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 102 | 38.88 | radiation | 20 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 129 | 39.05 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 132 | 39.06 | radiation | 10 | 270 | < th | dose dependent | rect. | 17 | 21 |
| 134 | 39.06 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 150 | 39.15 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 10 |
| 168 | 39.22 | radiation | 1 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 189 | 39.30 | radiation | 20 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 196 | 39.32 | humidity | 90 | 30 | < th | dose dependent | rect. | 8 | 17 |
| 205 | 39.36 | radiation | 10 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 211 | 39.37 | radiation | 10 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 232 | 39.43 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 243 | 39.46 | radiation | 10 | 270 | < th | dose dependent | no | NA | NA |
| 281 | 39.55 | humidity | 80 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 283 | 39.56 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 10 |
| 306 | 39.60 | radiation | 10 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 310 | 39.61 | wind | 1 | 720 | > th | dose independent | rect. | 3 | 2 |
| 312 | 39.61 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 23 |
| 327 | 39.63 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 12 |
| 340 | 39.65 | radiation | 10 | 270 | < th | dose independent | rect. | 17 | 15 |
| 365 | 39.70 | radiation | 10 | 720 | < th | dose independent | rect. | 3 | 5 |
| 430 | 39.80 | radiation | 10 | 270 | > th | dose independent | rect. | 13 | 23 |
| 445 | 39.81 | humidity | 80 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 497 | 39.85 | humidity | 50 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 501 | 39.86 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 546 | 39.89 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 579 | 39.93 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 19 |
| 679 | 40.03 | radiation | 30 | 270 | < th | dose independent | rect. | 9 | 22 |
| 691 | 40.03 | radiation | 10 | 30 | > th | dose dependent | rect. | 15 | 21 |
| 713 | 40.05 | radiation | 10 | 270 | < th | dose independent | rect. | 13 | 21 |
| 755 | 40.07 | humidity | 80 | 10 | < th | dose dependent | no | NA | NA |
| 765 | 40.07 | humidity | 80 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 766 | 40.08 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 17 |
| 779 | 40.08 | humidity | 80 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 806 | 40.10 | radiation | 10 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 834 | 40.13 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 11 |
| 844 | 40.14 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 8 |
| 845 | 40.14 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 10 |
| 881 | 40.16 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 22 |
| 904 | 40.18 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 971 | 40.23 | radiation | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 990 | 40.25 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 18 |