Os11g0265000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Uridine kinase family protein.
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Os11g0265000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Uridine kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.55 | 0.386 | 7.53 | -0.974 | 0.563 | -1.7 | -0.0452 | -0.765 | -0.244 | 6.41 | 28.74 | 14 | -- | -- |
| 68.35 | 0.385 | 7.54 | -1.1 | 0.575 | -1.71 | -0.0735 | -- | -0.271 | 6.36 | 29.45 | 13 | -- | -- |
| 67.55 | 0.383 | 7.53 | -0.97 | 0.56 | -1.7 | -- | -0.786 | -0.243 | 6.43 | 28.64 | 13 | -- | -- |
| 68.37 | 0.385 | 7.54 | -1.1 | 0.571 | -1.7 | -- | -- | -0.27 | 6.36 | 29.46 | 13 | -- | -- |
| 81.89 | 0.424 | 7.53 | -0.891 | -- | -1.54 | -- | -0.896 | -0.207 | -- | 27.6 | 11 | -- | -- |
| 107.57 | 0.486 | 7.46 | -0.703 | 0.591 | -- | 0.311 | -- | 0.0745 | 10.4 | -- | -- | -- | -- |
| 107.96 | 0.487 | 7.46 | -0.691 | 0.59 | -- | -- | -- | 0.075 | 10.3 | -- | -- | -- | -- |
| 82.95 | 0.426 | 7.54 | -1.04 | -- | -1.51 | -- | -- | -0.233 | -- | 28.11 | 10 | -- | -- |
| 96.93 | 0.461 | 7.49 | -- | 0.499 | -1.24 | -- | -- | -0.0621 | 7.51 | 29.46 | 13 | -- | -- |
| 129.21 | 0.531 | 7.48 | -0.7 | -- | -- | -- | -- | 0.0733 | -- | -- | -- | -- | -- |
| 120.55 | 0.514 | 7.44 | -- | 0.594 | -- | -- | -- | 0.152 | 10.4 | -- | -- | -- | -- |
| 109.74 | 0.488 | 7.51 | -- | -- | -1.22 | -- | -- | -0.0647 | -- | 28.31 | 2 | -- | -- |
| 142.15 | 0.556 | 7.46 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 5 | 66.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 6 | 67.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 8 | 67.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 10 | 67.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 18 | 67.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 19 | 67.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 21 | 68.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 24 | 68.10 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 29 | 68.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 34 | 68.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 37 | 69.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 41 | 69.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 44 | 69.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 46 | 69.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 75 | 70.70 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 78 | 70.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 96 | 71.02 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 99 | 71.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 119 | 71.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 141 | 71.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 170 | 71.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 183 | 71.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 233 | 71.92 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 244 | 71.95 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 290 | 72.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 479 | 72.62 | temperature | 15 | 720 | > th | dose dependent | sin | 22 | NA |
| 491 | 72.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 545 | 72.78 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 622 | 72.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 627 | 72.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 651 | 73.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 660 | 73.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 805 | 73.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 806 | 73.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |