Os02g0273000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uridine kinase-like protein.
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Os02g0273000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uridine kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.44 | 0.444 | 7.59 | -1 | 0.391 | -3.16 | 0.662 | -4.13 | 0.284 | 11.1 | 20.03 | 3617 | -- | -- |
| 90.72 | 0.444 | 7.71 | -0.988 | 0.453 | -1.49 | 0.581 | -- | 0.154 | 10.9 | 23.7 | 2373 | -- | -- |
| 91.04 | 0.444 | 7.6 | -0.99 | 0.397 | -3.04 | -- | -3.84 | 0.28 | 10.4 | 20.13 | 3622 | -- | -- |
| 91.81 | 0.446 | 7.71 | -0.978 | 0.442 | -1.44 | -- | -- | 0.182 | 10.6 | 23.54 | 2345 | -- | -- |
| 100.46 | 0.467 | 7.59 | -1.01 | -- | -3 | -- | -4.09 | 0.287 | -- | 20.14 | 4225 | -- | -- |
| 126.44 | 0.527 | 7.63 | -0.409 | 0.337 | -- | 0.612 | -- | 0.532 | 10.9 | -- | -- | -- | -- |
| 127.69 | 0.529 | 7.63 | -0.387 | 0.347 | -- | -- | -- | 0.532 | 10 | -- | -- | -- | -- |
| 102.07 | 0.471 | 7.71 | -1.03 | -- | -1.48 | -- | -- | 0.198 | -- | 23 | 2817 | -- | -- |
| 111.65 | 0.492 | 7.66 | -- | 0.416 | -0.985 | -- | -- | 0.382 | 10.4 | 24.19 | 2183 | -- | -- |
| 134.96 | 0.543 | 7.64 | -0.391 | -- | -- | -- | -- | 0.532 | -- | -- | -- | -- | -- |
| 131.63 | 0.537 | 7.62 | -- | 0.349 | -- | -- | -- | 0.575 | 10.1 | -- | -- | -- | -- |
| 119.54 | 0.509 | 7.67 | -- | -- | -1.12 | -- | -- | 0.381 | -- | 24.8 | 1504 | -- | -- |
| 139 | 0.55 | 7.63 | -- | -- | -- | -- | -- | 0.575 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 3 | 87.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 5 | 88.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 6 | 88.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 7 | 88.38 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 8 | 88.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 10 | 88.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 13 | 88.64 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 17 | 88.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 27 | 88.96 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 45 | 89.19 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 48 | 89.21 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 64 | 89.29 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 77 | 89.36 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 93 | 89.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 104 | 89.49 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 107 | 89.50 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 113 | 89.51 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 171 | 89.68 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 172 | 89.69 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 173 | 89.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 185 | 89.74 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 190 | 89.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 196 | 89.77 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 222 | 89.84 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 232 | 89.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 237 | 89.88 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 240 | 89.89 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 259 | 89.93 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 263 | 89.94 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 296 | 90.03 | humidity | 50 | 43200 | > th | dose independent | sin | 8 | NA |
| 303 | 90.04 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 305 | 90.05 | temperature | 20 | 4320 | < th | dose dependent | sin | 12 | NA |
| 320 | 90.08 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 17 | NA |
| 321 | 90.08 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 329 | 90.10 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 371 | 90.18 | humidity | 50 | 43200 | < th | dose independent | sin | 8 | NA |
| 372 | 90.18 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 441 | 90.32 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 466 | 90.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 536 | 90.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 537 | 90.48 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 570 | 90.52 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 610 | 90.58 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 17 | NA |
| 616 | 90.59 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 641 | 90.63 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 652 | 90.64 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 692 | 90.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 704 | 90.69 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 752 | 90.76 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 755 | 90.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 787 | 90.79 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 843 | 90.84 | humidity | 50 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 876 | 90.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 898 | 90.90 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 917 | 90.92 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 983 | 91.00 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 995 | 91.01 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |