BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0441400 Os05g0441400|AK108756
(255 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0441400 Protein of unknown function DUF623, plant doma... 305 3e-83
Os01g0863800 Protein of unknown function DUF623, plant doma... 143 1e-34
Os04g0685000 Protein of unknown function DUF623, plant doma... 95 6e-20
Os11g0156300 Protein of unknown function DUF623, plant doma... 91 8e-19
Os12g0158300 Protein of unknown function DUF623, plant doma... 83 2e-16
Os04g0415100 Protein of unknown function DUF623, plant doma... 78 7e-15
Os08g0102400 70 2e-12
>Os05g0441400 Protein of unknown function DUF623, plant domain containing protein
Length = 255
Score = 305 bits (780), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/255 (65%), Positives = 167/255 (65%)
Query: 1 MVRKLPLSSVLYTINSARDIXXXXXXXXXXXXXXXXXXXCKHPRXXXXXXXXXXXXXXXX 60
MVRKLPLSSVLYTINSARDI CKHPR
Sbjct: 1 MVRKLPLSSVLYTINSARDIPPSSPPPPAATPPAWMWPSCKHPRAHSFRSPSAASAAAAA 60
Query: 61 XXXXXIFLDSGESSFANSSARMHHDCASDSLSTESDVSATAEDMADAIVRGLRSDRLLFE 120
IFLDSGESSFANSSARMHHDCASDSLSTESDVSATAEDMADAIVRGLRSDRLLFE
Sbjct: 61 KTIASIFLDSGESSFANSSARMHHDCASDSLSTESDVSATAEDMADAIVRGLRSDRLLFE 120
Query: 121 PRAPSSSILDKKPVRRXXXXXXXXXXXXXXXXXXXXXXXXSEDPYEDFRASMAEMLAAHG 180
PRAPSSSILDKKPVRR SEDPYEDFRASMAEMLAAHG
Sbjct: 121 PRAPSSSILDKKPVRRAAGGGDDDDDGAASFGGGVAVAFDSEDPYEDFRASMAEMLAAHG 180
Query: 181 VGDWGWLEAMLGWYLRANGKETHAAIVAAFVDLVVXXXXXXXXXXXXXXFTLAGTDLEXX 240
VGDWGWLEAMLGWYLRANGKETHAAIVAAFVDLVV FTLAGTDLE
Sbjct: 181 VGDWGWLEAMLGWYLRANGKETHAAIVAAFVDLVVSTAARGSSSSRHSSFTLAGTDLESS 240
Query: 241 XXXXXXXXHISFRLR 255
HISFRLR
Sbjct: 241 SAGGGAAGHISFRLR 255
>Os01g0863800 Protein of unknown function DUF623, plant domain containing protein
Length = 244
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 107/181 (59%), Gaps = 17/181 (9%)
Query: 40 CKHPRXXXXXXXXXXXXXXXXXXXXXIFLDSGESSFANSSARMHHDCASDSLSTESDVSA 99
CK+PR IFLDS ESSF SSAR HDC SDSLST S+ SA
Sbjct: 38 CKNPRTQSFRAATAPPPPPGSRTIASIFLDSAESSFTTSSAR--HDC-SDSLSTASEASA 94
Query: 100 TAEDMADA---IVRGLRS-DRLLFEPRA-PSSSILDKKPVRRXXXXXXXXXXXXXXXXXX 154
AE A IVRGLRS DRLLF+P A +SSIL++K
Sbjct: 95 GAEAADTADDAIVRGLRSSDRLLFDPGASATSSILEEK---------SSDAAGEASFIGG 145
Query: 155 XXXXXXSEDPYEDFRASMAEMLAAHGVGDWGWLEAMLGWYLRANGKETHAAIVAAFVDLV 214
SEDPY DFR SM EM+ AHGVG+WGWLE MLGWYLRANGK+THAAI+AAF+D++
Sbjct: 146 VAVAFESEDPYVDFRVSMEEMVVAHGVGNWGWLEEMLGWYLRANGKDTHAAILAAFIDVI 205
Query: 215 V 215
V
Sbjct: 206 V 206
>Os04g0685000 Protein of unknown function DUF623, plant domain containing protein
Length = 246
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 73/138 (52%), Gaps = 16/138 (11%)
Query: 83 HHDCASDSLSTESDVSATAEDMADAIVRGLRSD--RLLFEPRAPSSSILDKKPVRRXXXX 140
H C S S S S V+ +D + I+RGLRS RL FEP + SS ++ +
Sbjct: 93 HSTCRSYS-SAASAVNDVVDDDDEVIIRGLRSSNRRLFFEPESTSSIVVKGR-------- 143
Query: 141 XXXXXXXXXXXXXXXXXXXXSEDPYEDFRASMAEMLAAHGVG---DWGWLEAMLGWYLRA 197
S DPY DFR SM EM+ +H G DWGWLE MLGWYLRA
Sbjct: 144 --AVDADAAAFDGATAMSIDSADPYGDFRRSMEEMVMSHMSGGGHDWGWLEEMLGWYLRA 201
Query: 198 NGKETHAAIVAAFVDLVV 215
NGK+TH IV AFVDLVV
Sbjct: 202 NGKKTHGFIVGAFVDLVV 219
>Os11g0156300 Protein of unknown function DUF623, plant domain containing protein
Length = 341
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 97 VSATAEDMADAIVRGL---RSDRLLFEPRAPSSSIL------DKKPVRRXXX-----XXX 142
+ +E+ ++A++R L +DR F+P P++SIL + KPV
Sbjct: 119 TTTASEEWSEAVIRSLGRTSTDRFFFDPGPPTNSILAAAAVPETKPVAAAAVFHDEEKEK 178
Query: 143 XXXXXXXXXXXXXXXXXXSEDPYEDFRASMAEMLAAHGVGDWGWLEAMLGWYLRANGKET 202
SEDPY DFR+SM EM+AAHG+ W LE +L WYLR NGK
Sbjct: 179 LPEPPASLVEESVAVAVESEDPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHN 238
Query: 203 HAAIVAAFVDLVV 215
HA IVAAFVDL+V
Sbjct: 239 HALIVAAFVDLLV 251
>Os12g0158300 Protein of unknown function DUF623, plant domain containing protein
Length = 345
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 43/55 (78%)
Query: 161 SEDPYEDFRASMAEMLAAHGVGDWGWLEAMLGWYLRANGKETHAAIVAAFVDLVV 215
SEDPY DFRASM EM+AAHG+ DW LE +L WYLR NGK H IVAAFVDL++
Sbjct: 202 SEDPYGDFRASMEEMVAAHGLRDWDALEELLSWYLRVNGKHNHPLIVAAFVDLLL 256
>Os04g0415100 Protein of unknown function DUF623, plant domain containing protein
Length = 327
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 161 SEDPYEDFRASMAEMLAAHGVGDWGWLEAMLGWYLRANGKETHAAIVAAFVDLVV 215
SEDPY DFR+SMA+M+AAHG+ DW LE +L WYL+ N K H IV AF+D++V
Sbjct: 242 SEDPYGDFRSSMADMVAAHGLRDWEGLEELLAWYLKLNAKGVHGVIVGAFIDMLV 296
>Os08g0102400
Length = 271
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 161 SEDPYEDFRASMAEMLAAHGVG----DWGWLEAMLGWYLRANGKETHAAIVAAFVDLVV 215
S +PY DFR SM M+ + G G DW WLE MLGWYLRAN K TH IV AF+DL+V
Sbjct: 169 SSNPYRDFRESMEAMVTSGGGGGGADDWRWLEEMLGWYLRANVKSTHGLIVGAFLDLLV 227
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,962,474
Number of extensions: 131000
Number of successful extensions: 424
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 8
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)