BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0383100 Os05g0383100|AK121835
(417 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0383100 Clathrin adaptor complex, medium chain family ... 865 0.0
Os01g0703600 Similar to Mu1 adaptin 157 1e-38
Os05g0543100 Similar to Clathrin coat assembly protein AP47... 155 4e-38
Os07g0620300 Clathrin adaptor complex, medium chain family ... 141 8e-34
Os02g0690700 Clathrin adaptor complex, medium chain family ... 137 2e-32
AK062296 79 9e-15
>Os05g0383100 Clathrin adaptor complex, medium chain family protein
Length = 417
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/417 (100%), Positives = 417/417 (100%)
Query: 1 MLQCVFLLSDSGEVMVEKQMTAHRVDRGICGWFWDYVLAHAAGDASKVLQVVVSPTHYLF 60
MLQCVFLLSDSGEVMVEKQMTAHRVDRGICGWFWDYVLAHAAGDASKVLQVVVSPTHYLF
Sbjct: 1 MLQCVFLLSDSGEVMVEKQMTAHRVDRGICGWFWDYVLAHAAGDASKVLQVVVSPTHYLF 60
Query: 61 QVYRNGVTFLACTQVEMPPLLAIEFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMM 120
QVYRNGVTFLACTQVEMPPLLAIEFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMM
Sbjct: 61 QVYRNGVTFLACTQVEMPPLLAIEFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMM 120
Query: 121 DNGFPLTTEPNILKEMIAPPNIVSKMLNVVTGKSSNLGNKLPDAAASFVPWRTTVVKDAS 180
DNGFPLTTEPNILKEMIAPPNIVSKMLNVVTGKSSNLGNKLPDAAASFVPWRTTVVKDAS
Sbjct: 121 DNGFPLTTEPNILKEMIAPPNIVSKMLNVVTGKSSNLGNKLPDAAASFVPWRTTVVKDAS 180
Query: 181 NEVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFSNPTIINDVRFHPC 240
NEVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFSNPTIINDVRFHPC
Sbjct: 181 NEVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFSNPTIINDVRFHPC 240
Query: 241 VRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKPQLTSDSGNCRVNVMVGIKND 300
VRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKPQLTSDSGNCRVNVMVGIKND
Sbjct: 241 VRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKPQLTSDSGNCRVNVMVGIKND 300
Query: 301 PGKTIDSITVQFRLPPLIASADLTANYGTVDILADQTCFWTIGQIPKDKAPSLSGNLRLE 360
PGKTIDSITVQFRLPPLIASADLTANYGTVDILADQTCFWTIGQIPKDKAPSLSGNLRLE
Sbjct: 301 PGKTIDSITVQFRLPPLIASADLTANYGTVDILADQTCFWTIGQIPKDKAPSLSGNLRLE 360
Query: 361 EGLTHLHTFPTFEVKFKIMGVALSGLQIDKLEVKNTPNAPYKGFRAQTQAGRYEVRS 417
EGLTHLHTFPTFEVKFKIMGVALSGLQIDKLEVKNTPNAPYKGFRAQTQAGRYEVRS
Sbjct: 361 EGLTHLHTFPTFEVKFKIMGVALSGLQIDKLEVKNTPNAPYKGFRAQTQAGRYEVRS 417
>Os01g0703600 Similar to Mu1 adaptin
Length = 429
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 183/383 (47%), Gaps = 40/383 (10%)
Query: 58 YLFQVYRNGVTFLACTQVEMPPLLAIEFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILD 117
Y+F + N V L ++ + FL RV DV Y +L E+ ++DNFV+VY++LD
Sbjct: 61 YMF-IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLD 119
Query: 118 EMMDNGFPLTTEPNILKEMIAPPNIVSKMLNVVTGKSSNLGNKLPDAAASFVPWRTTVVK 177
EMMD G+P TE IL E I + + P A + V WR+ ++
Sbjct: 120 EMMDFGYPQYTEAKILSEFIK-----------TDAYRMEVSQRPPMAVTNAVSWRSEGIR 168
Query: 178 DASNEVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFSNPTI------ 231
NEV++++VE ++ VN G +V+ + G +++ + L G+PE L ++ +
Sbjct: 169 YKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR 228
Query: 232 --------INDVRFHPCVRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKPQLT 283
++D++FH CVR +E+++ +SF+PPDG F+LM+YR+ I+V+ Q+
Sbjct: 229 ATKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIE 288
Query: 284 SDSGNCRVNVMVGIKND--PGKTIDSITVQFRLPPLIASADLTANYGTVDILADQTCF-W 340
S R+ +MV ++ T ++ ++ +P + ++ + G+ ++ W
Sbjct: 289 KHS-RSRIELMVKARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVW 347
Query: 341 TIGQIPKDKAPSLSGNLRLEEGLTHLHTFPT----FEVKFKIMGVALSGLQIDKLEVKNT 396
+ P K L +T P VKF+I +SG+Q+ L++
Sbjct: 348 KVKSFPGGKDYMCRAEFSL-PSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLKI--I 404
Query: 397 PNAPYKGF---RAQTQAGRYEVR 416
+ Y+ R T AG YE+R
Sbjct: 405 EKSGYQALPWVRYITMAGEYELR 427
>Os05g0543100 Similar to Clathrin coat assembly protein AP47 (Clathrin coat
associated protein AP47) (Golgi adaptor AP-1 47 kDa
protein) (HA1 47 kDa subunit) (Clathrin assembly protein
assembly protein complex 1 medium chain) (Uncoordinated
protein 101)
Length = 430
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/447 (26%), Positives = 212/447 (47%), Gaps = 56/447 (12%)
Query: 2 LQCVFLLSDSGEVMVEKQ----MTAHRVDRGICGWFWDYVLAHAAGDASKVLQVVV---S 54
+ +FLL G V+V + ++A + +R F+ +L + ++VL VV +
Sbjct: 6 VSALFLLDIKGRVLVWRDYRGDVSALQAER-----FFTKLLDKESD--AEVLSPVVHDDA 58
Query: 55 PTHYLFQVYRNGVTFLACTQVEMPPLLAIEFLSRVADVLTDYLGDLNEDIIKDNFVLVYQ 114
Y+F + N V L ++ + FL RV DV Y +L E+ ++DNFV+VY+
Sbjct: 59 GVSYMF-IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYE 117
Query: 115 ILDEMMDNGFPLTTEPNILKEMIAPPNIVSKMLNVVTGKSSNLGNKLPDAAASFVPWRTT 174
+LDEMMD G+P TE IL E I + + P A + V WR+
Sbjct: 118 LLDEMMDFGYPQYTEAMILSEFIK-----------TDAYRMEVTQRPPMAVTNAVSWRSE 166
Query: 175 VVKDASNEVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFSNPTI--- 231
++ NEV++++VE ++ VN G +V+ + G++++ + L G+PE L ++ +
Sbjct: 167 GIRYKKNEVFLDVVESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEA 226
Query: 232 -----------INDVRFHPCVRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKP 280
++D++FH CVR +E+++ +SF+PPDG F+LM+YR+ I+V+
Sbjct: 227 QGRTTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEA 286
Query: 281 QLTSDSGNCRVNVMVGIKND--PGKTIDSITVQFRLPPLIASADLTANYGTVDILADQTC 338
Q+ S R+ + V ++ T ++ ++ +P + ++ + G+ ++
Sbjct: 287 QVEKHS-RSRIQITVKTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDA 345
Query: 339 F-WTIGQIPKDKAPSLSGNLRL-----EEGLTHLHTFPTFEVKFKIMGVALSGLQIDKLE 392
W I P K L E+G+ VKF+I +SG+Q+ L+
Sbjct: 346 MVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKA--PIRVKFEIPYFTVSGIQVRYLK 403
Query: 393 VKNTPNAPYKGF---RAQTQAGRYEVR 416
+ + Y+ R T AG YE+R
Sbjct: 404 I--IEKSGYQALPWVRYITMAGEYELR 428
>Os07g0620300 Clathrin adaptor complex, medium chain family protein
Length = 451
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 203/467 (43%), Gaps = 68/467 (14%)
Query: 1 MLQCVFLLSDSGEVMVEKQMTAHRVDRGICGWFWDYVLAHAAGDASKVLQVV-VSPTHYL 59
M+ F+LS G+ +V + V +G F+ V +A + V V +Y+
Sbjct: 1 MISQFFVLSQRGDHIVFRDYRGE-VPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYI 59
Query: 60 FQVYRNGVTFLACTQVEMPPLLAIEFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEM 119
V G+ F+ T V + P L +E L R+A V DYLG LNED ++ NF+LVY++LDE+
Sbjct: 60 -HVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEV 118
Query: 120 MDNGFPLTTEPNILKEMIAPPNIVSKMLNVVTGKSSNLG---------NKLPDAAASFVP 170
+D G+P TT +LK I ++ + V G+ LG ++P A +
Sbjct: 119 IDFGYPQTTSTEVLKSY-----IFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSV 173
Query: 171 WRTTVVKDASNEVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFS--- 227
T E++V+I+E + + G ++ E G IQ+ S L G PE+ L+ +
Sbjct: 174 VATEPGGKKREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDL 233
Query: 228 ------------------NPTIINDVRFHPCVRFRPWESNQILSFVPPDGQFELMSYRVK 269
I++D FH V ++ ++ L +PPDG+F +M+YR+
Sbjct: 234 SIGRTGSSSYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRIT 293
Query: 270 KLKTTPIYVKPQLTSDSGNCRVNVMVGIKND--PGKTIDSITVQFRLPPLIASADLTANY 327
+ P V L ++G R V++ I+ D T ++I VQ +P A
Sbjct: 294 QEFKPPFRVT-ALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEA 352
Query: 328 GTVDILAD-----QTCFWTIGQIPKDKAPSL----------SGNLRLEEGLTHLH-TFPT 371
G V D + W + +I +L GNL E G +++ T P
Sbjct: 353 GAVGQTTDFKEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNLTKEAGPVNMNFTIPM 412
Query: 372 FEVKFKIMGVALSGLQIDKLEV--KNTPNAPYKGFRAQTQAGRYEVR 416
+ S LQ+ L++ K+ PY+ R TQA Y R
Sbjct: 413 YNT---------SKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR 450
>Os02g0690700 Clathrin adaptor complex, medium chain family protein
Length = 438
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 181/370 (48%), Gaps = 48/370 (12%)
Query: 82 AIEFLSRVADVLTDYLGD-LNEDIIKDNFVLVYQILDEMMDNGFPLTTEPNILKEMIAPP 140
A +F+ + Y G +ED I++NFVL+Y++LDE+MD G+P P ILK I
Sbjct: 81 AFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQE 140
Query: 141 NIVSKMLNVVTGKSSNLGNK-LPDAA---ASFVPWRTTVVKDASNEVYVNIVEELDACVN 196
+ S SS +K +P+A V WR + NEV+++IVE ++ ++
Sbjct: 141 GVRSPF-------SSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEVFLDIVESVNLLMS 193
Query: 197 REGALVKCEAYGKIQVNSSLPGVPELTLSF------------------SNPTI-INDVRF 237
+G++++C+ GKI + L G+P+L L S TI ++DV F
Sbjct: 194 SKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPAKSGKTIELDDVTF 253
Query: 238 HPCVRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKPQLTSDSGNCRVNVMVGI 297
H CV + S + +SFVPPDG+FELM YR+ + P V P + + G R+ + V +
Sbjct: 254 HQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTI-KELGRTRMEINVKV 312
Query: 298 KNDPGKTIDSITVQFRLPPLIASADLT-------ANY-GTVDILADQTCFWTIGQIPKDK 349
K+ G + ++ V ++P +A + A Y ++D L W I + P
Sbjct: 313 KSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLV-----WKIRKFPGQT 367
Query: 350 APSLSGNLRLEEGLTHLHTF--PTFEVKFKIMGVALSGLQIDKLEV-KNTPNAPYKGFRA 406
++S + L + ++ P +++F++ SGL++ L+V + + + R
Sbjct: 368 EATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRY 427
Query: 407 QTQAGRYEVR 416
T+AG YE+R
Sbjct: 428 ITRAGSYEIR 437
>AK062296
Length = 310
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 114/276 (41%), Gaps = 51/276 (18%)
Query: 182 EVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFS-------------- 227
E++V+I+E + + G ++ E G IQ+ S L G PE+ L+ +
Sbjct: 44 EIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGRTGSSSYD 103
Query: 228 -------NPTIINDVRFHPCVRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKP 280
I++D FH V ++ ++ L +PPDG+F +M+YR+ + P V
Sbjct: 104 YRSSSGGGAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPFRVTA 163
Query: 281 QLTSDSGNCRVNVMVGIKND--PGKTIDSITVQFRLPPLIASADLTANYGTVDILAD--- 335
L ++G R V++ I+ D T ++I VQ +P A G V D
Sbjct: 164 -LIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTDFKE 222
Query: 336 --QTCFWTIGQIPKDKAPSL----------SGNLRLEEGLTHLH-TFPTFEVKFKIMGVA 382
+ W + +I +L GNL E G +++ T P +
Sbjct: 223 GSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNLTKEAGPVNMNFTIPMYNT-------- 274
Query: 383 LSGLQIDKLEV--KNTPNAPYKGFRAQTQAGRYEVR 416
S LQ+ L++ K+ PY+ R TQA Y R
Sbjct: 275 -SKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR 309
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,927,225
Number of extensions: 559547
Number of successful extensions: 1135
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 6
Length of query: 417
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 314
Effective length of database: 11,657,759
Effective search space: 3660536326
Effective search space used: 3660536326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)