BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0267100 Os05g0267100|AK065555
(143 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0267100 Cellular retinaldehyde-binding/triple function... 295 6e-81
Os05g0267800 Cellular retinaldehyde-binding/triple function... 187 3e-48
Os01g0264700 Cellular retinaldehyde binding/alpha-tocophero... 145 1e-35
Os02g0752000 Cellular retinaldehyde-binding/triple function... 121 1e-28
Os03g0724100 Cellular retinaldehyde binding/alpha-tocophero... 120 3e-28
>Os05g0267100 Cellular retinaldehyde-binding/triple function, C-terminal domain
containing protein
Length = 143
Score = 295 bits (756), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MNSADEQEEHVTWLIDLRGWSISSTPLSTSRESMHIVQNYYPGIIAVAILSNTPRIFESF 60
MNSADEQEEHVTWLIDLRGWSISSTPLSTSRESMHIVQNYYPGIIAVAILSNTPRIFESF
Sbjct: 1 MNSADEQEEHVTWLIDLRGWSISSTPLSTSRESMHIVQNYYPGIIAVAILSNTPRIFESF 60
Query: 61 WKIIKHFLEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAFGGRNSITIDIDNYAERM 120
WKIIKHFLEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAFGGRNSITIDIDNYAERM
Sbjct: 61 WKIIKHFLEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAFGGRNSITIDIDNYAERM 120
Query: 121 RRSDLARGVLIIQTDINLISRHH 143
RRSDLARGVLIIQTDINLISRHH
Sbjct: 121 RRSDLARGVLIIQTDINLISRHH 143
>Os05g0267800 Cellular retinaldehyde-binding/triple function, N-terminal domain
containing protein
Length = 283
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 105/129 (81%)
Query: 1 MNSADEQEEHVTWLIDLRGWSISSTPLSTSRESMHIVQNYYPGIIAVAILSNTPRIFESF 60
M+S + ++E WL D +GW +++TPL RE HI+QN+YPG+I+VAILSN PRIFESF
Sbjct: 142 MHSENMEDECTVWLTDFQGWVLTNTPLPLLRECTHIIQNHYPGLISVAILSNPPRIFESF 201
Query: 61 WKIIKHFLEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAFGGRNSITIDIDNYAERM 120
WKI+ +F+E K+ EKVKF+YTNNPESHKIV++MFD+D LE+AFGGRN++ D+D YAERM
Sbjct: 202 WKIVCYFIEPKLKEKVKFVYTNNPESHKIVADMFDLDKLESAFGGRNTLPFDMDKYAERM 261
Query: 121 RRSDLARGV 129
+RSD RG
Sbjct: 262 KRSDQMRGA 270
>Os01g0264700 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 311
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 96/137 (70%)
Query: 6 EQEEHVTWLIDLRGWSISSTPLSTSRESMHIVQNYYPGIIAVAILSNTPRIFESFWKIIK 65
E +E + WL D + W++ STPL +RE+++++Q+ YP + +AIL N PRIFESFWKI+K
Sbjct: 143 EDQEKMVWLTDFQSWTLGSTPLKVTRETVNVLQDCYPERLGLAILYNPPRIFESFWKIVK 202
Query: 66 HFLEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAFGGRNSITIDIDNYAERMRRSDL 125
FL+ + +KVKF+Y+++ ES KI++++FD+D L++AFGGRN T + ++YAERMR D+
Sbjct: 203 PFLDHETYKKVKFVYSSDKESQKIMADVFDLDKLDSAFGGRNPATFEYNSYAERMRADDI 262
Query: 126 ARGVLIIQTDINLISRH 142
G I L H
Sbjct: 263 KMGSSFKSNGITLPQDH 279
>Os02g0752000 Cellular retinaldehyde-binding/triple function, N-terminal domain
containing protein
Length = 378
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 81/118 (68%)
Query: 8 EEHVTWLIDLRGWSISSTPLSTSRESMHIVQNYYPGIIAVAILSNTPRIFESFWKIIKHF 67
+ + WLID G+S+S+ L ++ + ++Q +YP + VAIL N P+ FESFWKI
Sbjct: 143 QSQMVWLIDFAGFSLSNISLHVTKLTADVLQGHYPERLGVAILYNAPKFFESFWKIASPI 202
Query: 68 LEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAFGGRNSITIDIDNYAERMRRSDL 125
LE K KVKF+Y + PE++KI+ ++F+M+ LE+AFGG+N T +I++YA RMR D+
Sbjct: 203 LEPKTFNKVKFVYPDRPETNKIMEDLFNMEELESAFGGKNQATFNINDYAARMREDDI 260
>Os03g0724100 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 299
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Query: 3 SADEQEEHVTWLIDLRGWSIS-STPLSTSRESMHIVQNYYPGIIAVAILSNTPRIFESFW 61
S E +E + WLID GW+++ +TP+ T+RE +I+QN+YP +A+ IL N P++FE+FW
Sbjct: 137 SLPEDQEKMVWLIDFTGWTLANATPIKTARECANILQNHYPERLAIGILFNPPKVFEAFW 196
Query: 62 KIIKHFLEAKMSEKVKFLYTNNPESHKIVSEMFDMDLLETAFGGRNSITIDIDNYAERMR 121
K++KHFL+ K +KV F+Y N ES KI+ + D ++L FGG+N++ + Y++ M
Sbjct: 197 KVVKHFLDPKSIQKVNFVYLKNEESMKILHKYIDPEVLPVEFGGKNNVVYSHEEYSKLMV 256
Query: 122 RSDL 125
+ D+
Sbjct: 257 KDDI 260
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,529,109
Number of extensions: 158650
Number of successful extensions: 340
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 5
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)