Os05g0267100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein.
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Os05g0267100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.28 | 0.645 | 6.47 | -3.13 | 2.23 | -3.19 | 0.638 | -0.25 | -0.0228 | 11.7 | 0.9129 | 1314 | 11.1 | -- |
| 188.01 | 0.639 | 6.47 | -3.13 | 2.27 | -3.08 | 0.657 | -- | -0.0247 | 11.7 | 0.9704 | 1310 | 10.8 | -- |
| 187.12 | 0.637 | 6.45 | -3.17 | 2.62 | -3.4 | -- | 1.18 | -0.0171 | 11.2 | 0.9999 | 1276 | 9.8 | -- |
| 187.76 | 0.638 | 6.44 | -3.04 | 2.9 | -3.6 | -- | -- | 0.00619 | 11.1 | 0.9941 | 1267 | 9.34 | -- |
| 233 | 0.711 | 6.46 | -3.15 | -- | -3.06 | -- | 0.873 | -0.0456 | -- | 2.101 | 4798 | 10.2 | -- |
| 265.75 | 0.764 | 6.43 | -2.68 | 1.74 | -- | 0.205 | -- | 0.252 | 13.4 | -- | -- | -- | -- |
| 265.92 | 0.764 | 6.43 | -2.67 | 1.74 | -- | -- | -- | 0.253 | 13.4 | -- | -- | -- | -- |
| 211.79 | 0.678 | 6.44 | -3.09 | -- | -2.64 | -- | -- | 0.0241 | -- | 0.6373 | 1672 | 7.78 | -- |
| 384.69 | 0.913 | 6.35 | -- | 3.33 | -3.57 | -- | -- | 0.328 | 10.9 | 10 | 1249 | 8.4 | -- |
| 452.7 | 0.994 | 6.46 | -2.74 | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
| 453.85 | 0.997 | 6.37 | -- | 1.79 | -- | -- | -- | 0.551 | 13.4 | -- | -- | -- | -- |
| 381.21 | 0.909 | 6.45 | -- | -- | -3.06 | -- | -- | 0.35 | -- | 10 | 4714 | 8.5 | -- |
| 650.57 | 1.19 | 6.39 | -- | -- | -- | -- | -- | 0.52 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 7 | 201.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 12 | 201.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 15 |
| 17 | 202.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 10 |
| 18 | 202.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 19 | 202.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 32 | 202.38 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |
| 34 | 202.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 43 | 202.55 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 59 | 202.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 21 |
| 71 | 202.96 | radiation | 1 | 720 | < th | dose dependent | sin | 12 | NA |
| 79 | 203.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 83 | 203.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 85 | 203.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 98 | 203.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 112 | 203.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 124 | 203.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 184 | 204.49 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 194 | 204.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 219 | 205.06 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 244 | 205.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 246 | 205.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 256 | 205.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 263 | 205.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 264 | 205.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 267 | 205.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 271 | 205.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 274 | 205.82 | radiation | 1 | 1440 | < th | dose independent | sin | 16 | NA |
| 283 | 205.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 346 | 206.65 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 353 | 206.70 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 370 | 206.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 391 | 206.95 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 424 | 207.23 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 17 |
| 443 | 207.44 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 444 | 207.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 493 | 207.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 494 | 207.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 495 | 207.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 555 | 208.05 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 614 | 208.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 620 | 208.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 683 | 208.92 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 687 | 208.93 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 758 | 209.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 778 | 209.38 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 813 | 209.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 820 | 209.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 834 | 209.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 20 |