BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0210600 Os05g0210600|AK104996
(401 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0210600 Protein prenyltransferase domain containing pr... 809 0.0
Os01g0218200 Thioredoxin domain 2 containing protein 578 e-165
Os05g0587300 Protein prenyltransferase domain containing pr... 338 4e-93
Os02g0753500 Tetratricopeptide-like helical domain containi... 163 2e-40
Os10g0486900 Tetratricopeptide-like helical domain containi... 67 2e-11
Os04g0538000 Heat shock chaperonin-binding domain containin... 67 3e-11
>Os05g0210600 Protein prenyltransferase domain containing protein
Length = 401
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/401 (97%), Positives = 391/401 (97%)
Query: 1 LYDRALALCPDSXXXXXXXXXXLIGLTRLGEAVEECEEAIRLDPSYGRAHQRLASLQIRL 60
LYDRALALCPDS LIGLTRLGEAVEECEEAIRLDPSYGRAHQRLASLQIRL
Sbjct: 1 LYDRALALCPDSAACRANRAAALIGLTRLGEAVEECEEAIRLDPSYGRAHQRLASLQIRL 60
Query: 61 GRTADARKQIGMGGLQPDIVELHKLEAVDKHLGRFADARKIGNWKSALRECNAAIAAGAD 120
GRTADARKQIGMGGLQPDIVELHKLEAVDKHLGRFADARKIGNWKSALRECNAAIAAGAD
Sbjct: 61 GRTADARKQIGMGGLQPDIVELHKLEAVDKHLGRFADARKIGNWKSALRECNAAIAAGAD 120
Query: 121 SCAMLFASRAEALLQINQLDEADLAISRASKLDCSSSCSQDMMFCGFQSNSYLYYVHAQV 180
SCAMLFASRAEALLQINQLDEADLAISRASKLDCSSSCSQDMMFCGFQSNSYLYYVHAQV
Sbjct: 121 SCAMLFASRAEALLQINQLDEADLAISRASKLDCSSSCSQDMMFCGFQSNSYLYYVHAQV 180
Query: 181 DIAFGRFDSAMSSMEKARKIDSGNVEVMAMHKSVRTVAQARTLGNELFHSGKFAEAFLAY 240
DIAFGRFDSAMSSMEKARKIDSGNVEVMAMHKSVRTVAQARTLGNELFHSGKFAEAFLAY
Sbjct: 181 DIAFGRFDSAMSSMEKARKIDSGNVEVMAMHKSVRTVAQARTLGNELFHSGKFAEAFLAY 240
Query: 241 GEGLKHHPANSVLYCNRAACMFKLGQWEKSIEDCNEALKIQPNYWKALLRRAASYGKIEQ 300
GEGLKHHPANSVLYCNRAACMFKLGQWEKSIEDCNEALKIQPNYWKALLRRAASYGKIEQ
Sbjct: 241 GEGLKHHPANSVLYCNRAACMFKLGQWEKSIEDCNEALKIQPNYWKALLRRAASYGKIEQ 300
Query: 301 WADSVKDYEVLRRELPGDTEVAEGHFHALVALRSSRGEDVSNMKFGGEVEALVGAEQFQM 360
WADSVKDYEVLRRELPGDTEVAEGHFHALVALRSSRGEDVSNMKFGGEVEALVGAEQFQM
Sbjct: 301 WADSVKDYEVLRRELPGDTEVAEGHFHALVALRSSRGEDVSNMKFGGEVEALVGAEQFQM 360
Query: 361 ATTLPGTILLKIFPFHCFHVHHAAKPQSRPWTNEVIGQQVC 401
ATTLPGTILLKIFPFHCFHVHHAAKPQSRPWTNEVIGQQVC
Sbjct: 361 ATTLPGTILLKIFPFHCFHVHHAAKPQSRPWTNEVIGQQVC 401
>Os01g0218200 Thioredoxin domain 2 containing protein
Length = 672
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/386 (72%), Positives = 323/386 (83%), Gaps = 11/386 (2%)
Query: 1 LYDRALALCPDSXXXXXXXXXXLIGLTRLGEAVEECEEAIRLDPSYGRAHQRLASLQIRL 60
LYDRALALCPD+ LIGL R+GEAV+ECEEA+R+DPSYGRAHQRLASL IRL
Sbjct: 222 LYDRALALCPDNAACRGNRAAALIGLRRIGEAVKECEEAVRIDPSYGRAHQRLASLHIRL 281
Query: 61 GRTADARKQIGMGGLQPDIVELHKLEAVDKHLGRFADARKIGNWKSALRECNAAIAAGAD 120
G DA++ + + QPD++ELHKL+ V+KHLGR DARK+G+WKS LRE +A+IAAGAD
Sbjct: 282 GHIEDAQRHLSLATPQPDLLELHKLQTVEKHLGRCMDARKVGDWKSVLRESDASIAAGAD 341
Query: 121 SCAMLFASRAEALLQINQLDEADLAISRASKLDCSSSCSQDMMFCGFQSNSYLYYVHAQV 180
AMLFASRAEALL++NQLDEADLAIS ASKLD SSSC+ D FCGF +N+YL+YVHAQV
Sbjct: 342 CSAMLFASRAEALLRLNQLDEADLAISSASKLDYSSSCTSDNKFCGFLANAYLFYVHAQV 401
Query: 181 DIAFGRFDSAMSSMEKARKIDSGNVEVMAMHKSVRTVAQARTLGNELFHSGKFAEAFLAY 240
D+A GRFD A+SS++KAR ID GNVEV+ MH +V+ VA+AR+LGNELF+SGKF+EA LAY
Sbjct: 402 DMALGRFDHAVSSVDKARIIDQGNVEVVTMHNNVKAVARARSLGNELFNSGKFSEACLAY 461
Query: 241 GEGLKHHPANSVLYCNRAACMFKLGQWEKSIEDCNEALKIQPNYWKALLRRAASYGKIEQ 300
GEGLKHHP N VLYCNRAAC FKLGQWEKSIEDCNEALKIQPNY KALLRRAASYGK+E+
Sbjct: 462 GEGLKHHPVNPVLYCNRAACRFKLGQWEKSIEDCNEALKIQPNYPKALLRRAASYGKMER 521
Query: 301 WADSVKDYEVLRRELPGDTEVAEGHFHALVALRSSRGEDVSNMKFGGEVEALVGAEQFQM 360
WA+SVKDYEVLR+ELPGDTEVAE +FHA VAL+SSRGE+VSNMKFGGEVEA+ G EQFQM
Sbjct: 522 WAESVKDYEVLRKELPGDTEVAEAYFHAQVALKSSRGEEVSNMKFGGEVEAITGMEQFQM 581
Query: 361 ATTLPGTILL-----------KIFPF 375
AT+LPG ++ KI PF
Sbjct: 582 ATSLPGVSVIHFMTPLNQQCCKISPF 607
>Os05g0587300 Protein prenyltransferase domain containing protein
Length = 555
Score = 338 bits (867), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 173/299 (57%), Positives = 214/299 (71%), Gaps = 2/299 (0%)
Query: 2 YDRALALCPDSXXXXXXXXXXLIGLTRLGEAVEECEEAIRLDPSYGRAHQRLASLQIRLG 61
YD+A+ALCPDS LIGL RL EA+ ECEEAIR DP+ GRAH RLA+L +R G
Sbjct: 241 YDQAVALCPDSAACRSNRAAALIGLGRLAEALRECEEAIRRDPASGRAHSRLAALCLRFG 300
Query: 62 RTADARKQIGMGGL--QPDIVELHKLEAVDKHLGRFADARKIGNWKSALRECNAAIAAGA 119
AR+ + G Q D E +L+ V++HLGR DARK G+WKSALRE +AAIA GA
Sbjct: 301 MVERAREHFMLAGQVNQSDPAEFQRLQEVERHLGRCMDARKTGDWKSALREADAAIANGA 360
Query: 120 DSCAMLFASRAEALLQINQLDEADLAISRASKLDCSSSCSQDMMFCGFQSNSYLYYVHAQ 179
DS +L A R+EALL++N+L+EAD I+ SKLD +S S G ++SY++ V AQ
Sbjct: 361 DSSQLLLALRSEALLRLNKLEEADSTITSLSKLDIASLSSMSTKLSGMVADSYVHVVEAQ 420
Query: 180 VDIAFGRFDSAMSSMEKARKIDSGNVEVMAMHKSVRTVAQARTLGNELFHSGKFAEAFLA 239
V++AFGRFD A++ EKAR ID GN EV + ++R VAQAR GNELF +GKFAEA LA
Sbjct: 421 VNMAFGRFDIAVTMAEKARVIDPGNTEVGRITNNIRLVAQARGQGNELFKAGKFAEASLA 480
Query: 240 YGEGLKHHPANSVLYCNRAACMFKLGQWEKSIEDCNEALKIQPNYWKALLRRAASYGKI 298
YGEGLK+ P+N VLYCNRAAC KLG+W K++EDCNEALK+ P Y KALLRRAASY K+
Sbjct: 481 YGEGLKYEPSNPVLYCNRAACWSKLGRWMKAVEDCNEALKVHPGYTKALLRRAASYAKV 539
>Os02g0753500 Tetratricopeptide-like helical domain containing protein
Length = 217
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 135/217 (62%), Gaps = 4/217 (1%)
Query: 126 FASRAEALLQINQLDEADLAISRASKLDCSSSCSQDMMFCGFQSNSYLYYVHAQVDIAFG 185
A +AEAL+++++ DEAD + A + S F G +++Y+ + AQVD+A G
Sbjct: 1 MALQAEALVKLSRHDEADAVLGGAPRFGVDESTK----FFGTVAHAYVLMIRAQVDMAAG 56
Query: 186 RFDSAMSSMEKARKIDSGNVEVMAMHKSVRTVAQARTLGNELFHSGKFAEAFLAYGEGLK 245
RF+ A+++ + A ++D N E+ +H+ + VA AR GN+LF + +FAEA AY EGL
Sbjct: 57 RFEDAVATAQTACQLDPSNREIANVHRRAKVVASARLRGNDLFKASRFAEACAAYCEGLD 116
Query: 246 HHPANSVLYCNRAACMFKLGQWEKSIEDCNEALKIQPNYWKALLRRAASYGKIEQWADSV 305
N+VL CNRAAC +L ++EK++EDCN AL ++P Y KA LRRA K+E+W S+
Sbjct: 117 RETGNAVLLCNRAACHARLARYEKAVEDCNGALAMRPAYSKARLRRADCNVKLERWEASL 176
Query: 306 KDYEVLRRELPGDTEVAEGHFHALVALRSSRGEDVSN 342
+DY+VL +ELP + ++ + LRS R +++
Sbjct: 177 RDYQVLIQELPENEDMKKALSEVEAKLRSQRNGGIAS 213
>Os10g0486900 Tetratricopeptide-like helical domain containing protein
Length = 236
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 220 ARTLGNELFHSGKFAEAFLAYGEGLK-------HHPANSVLYCNRAACMFKLGQWEKSIE 272
A+ GN+ F +G++ A Y L+ S + NRA C KLG+++++I+
Sbjct: 67 AKAEGNKFFGAGEYERALSQYETALQIAAELESAEDIRSACHSNRAVCFLKLGKYDETIK 126
Query: 273 DCNEALKIQPNYWKALLRRAASYGKIEQWADSVKDYEVLRRELPGDTEVAEGHFHALVAL 332
+C +AL++ P+Y KALLRR ++ K+E + +++ D + + EL E A+ L L
Sbjct: 127 ECTKALELNPSYLKALLRRGEAHEKLEHYDEAIADMKKI-IELDPSNEQAKRSLFRLEPL 185
Query: 333 RSSRGEDVSNMKFG 346
+ + E + G
Sbjct: 186 AAEKREKMKEEMIG 199
>Os04g0538000 Heat shock chaperonin-binding domain containing protein
Length = 574
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 85/176 (48%), Gaps = 15/176 (8%)
Query: 178 AQVDIAFGRFDSAMSSMEKA----------RKIDSGNVEVMAMHK----SVRTVAQARTL 223
A++ F +D A+ + +KA +K++ + + + + + R
Sbjct: 332 AKIAKCFKDYDVAIETYQKALTEHRNPDTLKKLNDAEIAKKELEQQEYYDPKIADEEREK 391
Query: 224 GNELFHSGKFAEAFLAYGEGLKHHPANSVLYCNRAACMFKLGQWEKSIEDCNEALKIQPN 283
GNE F K+ EA Y E L+ +P + +Y NRAAC KLG + ++D + +++ P
Sbjct: 392 GNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIELDPT 451
Query: 284 YWKALLRRAASYGKIEQWADSVKDYEVLRRELPGDTEVAEGHFHALVAL-RSSRGE 338
+ K R+ A ++++ +++ Y+ + P + E+ +G + + ++SRGE
Sbjct: 452 FSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRINKASRGE 507
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,330,708
Number of extensions: 468591
Number of successful extensions: 1305
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1286
Number of HSP's successfully gapped: 8
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)