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Os04g0538000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock chaperonin-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.98 (0.038) R2 : 0.769
β1 : 1.37 (0.139) R2dD : 0.0514 R2D : 0.0284
β2 : 3.42 (0.0964) R2dC : 0.672 R2C : 0.512
β3 : -2.74 (0.136) R2dE : 0.217 R2E : 0.0441
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.117 (0.0812) R2dN8 : 0.00161 R2N8 : -0.00347
σ : 0.71
deviance : 232.29
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_____
C
peak time of C : 8.93
E
wheather : radiation
threshold : 7.775
memory length : 64
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 21.1
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
216.64 0.692 7.98 1.26 3.43 -2.68 1.8 -2.13 0.12 8.93 7.83 63 21.1 --
222.74 0.695 7.97 1.32 3.41 -2.71 1.67 -- 0.133 9.05 7.8 63 20.9 --
227.37 0.702 7.98 1.33 3.44 -2.69 -- -1.85 0.122 8.84 7.75 64 21.3 --
232.29 0.71 7.98 1.37 3.42 -2.74 -- -- 0.117 8.93 7.775 64 21.1 --
358.48 0.887 8.05 1.27 -- -2.88 -- -1.72 0.229 -- 22.58 5 7.51 --
332.54 0.855 7.96 1.23 3.18 -- 1.82 -- 0.261 10.6 -- -- -- --
346.07 0.871 7.96 1.3 3.17 -- -- -- 0.265 10.5 -- -- -- --
346.19 0.867 8.04 1.29 -- -3.13 -- -- 0.258 -- 335.9 2 7.54 --
282.17 0.782 8.01 -- 3.42 -2.7 -- -- -0.0196 8.88 7.388 64 21.1 --
962.25 1.45 8.04 1.25 -- -- -- -- 0.252 -- -- -- -- --
390.66 0.925 7.99 -- 3.16 -- -- -- 0.121 10.5 -- -- -- --
390.54 0.923 8.07 -- -- -3.13 -- -- 0.116 -- 468.1 2 7.56 --
1003.14 1.48 8.07 -- -- -- -- -- 0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.23 radiation 10.0 90 < th dose dependent rect. 1 13
9 224.33 radiation 10.0 30 < th dose dependent sin 3 NA
37 231.93 radiation 10.0 30 < th dose dependent rect. 2 8
70 236.34 radiation 20.0 14400 < th dose independent rect. 3 3
75 237.05 radiation 10.0 90 < th dose dependent rect. 1 18
77 237.48 radiation 1.0 90 > th dose independent sin 3 NA
78 237.53 radiation 1.0 90 < th dose independent sin 3 NA
79 237.70 radiation 10.0 90 < th dose independent rect. 1 13
84 237.95 radiation 1.0 90 < th dose independent rect. 2 9
86 238.00 radiation 1.0 90 < th dose independent rect. 2 7
116 239.18 radiation 20.0 10 < th dose dependent rect. 2 4
149 241.58 wind 9.0 10 < th dose independent rect. 6 20
156 241.71 radiation 10.0 10 < th dose independent rect. 2 4
161 241.93 wind 9.0 270 < th dose independent rect. 3 22
162 242.00 radiation 40.0 30 < th dose dependent rect. 12 18
164 242.16 wind 9.0 10 < th dose independent rect. 2 4
165 242.16 temperature 10.0 10 > th dose independent rect. 2 4
167 242.16 temperature 30.0 10 < th dose independent rect. 2 4
168 242.16 humidity 50.0 10 > th dose independent rect. 2 4
171 242.16 atmosphere 995.0 10 > th dose independent rect. 2 4
172 242.16 atmosphere 1010.0 10 < th dose independent rect. 2 4
177 242.16 temperature 10.0 10 > th dose independent rect. 6 20
179 242.25 precipitation 0.1 270 < th dose independent rect. 1 2
180 242.25 precipitation 0.1 270 < th dose dependent rect. 1 2
186 242.42 wind 9.0 270 < th dose dependent rect. 1 2
188 242.44 temperature 10.0 270 > th dose independent rect. 1 2
190 242.44 temperature 30.0 270 < th dose independent rect. 1 2
191 242.44 humidity 50.0 270 > th dose independent rect. 1 2
194 242.44 atmosphere 995.0 270 > th dose independent rect. 1 2
195 242.44 atmosphere 1010.0 270 < th dose independent rect. 1 2
197 242.44 radiation 1.0 270 < th dose independent rect. 1 2
202 242.44 temperature 10.0 270 > th dose independent rect. 3 22
203 242.44 radiation 1.0 270 < th dose dependent rect. 1 2
208 242.45 temperature 10.0 270 > th dose dependent rect. 1 2
211 242.48 wind 9.0 270 < th dose independent rect. 1 2
224 242.72 wind 1.0 270 > th dose independent rect. 9 10
242 243.16 precipitation 0.1 30 < th dose independent rect. 2 4
243 243.16 precipitation 0.1 30 < th dose dependent rect. 2 4
250 243.26 wind 9.0 10 < th dose dependent rect. 2 4
256 243.46 wind 9.0 30 < th dose dependent rect. 6 20
280 243.77 temperature 10.0 10 > th dose dependent rect. 2 4
285 243.87 humidity 50.0 10 > th dose dependent rect. 2 4
291 244.13 radiation 30.0 1440 < th dose independent rect. 3 4
302 244.48 wind 9.0 1440 < th dose independent rect. 3 4
303 244.48 temperature 10.0 1440 > th dose independent rect. 3 4
306 244.48 temperature 30.0 1440 < th dose independent rect. 3 4
310 244.48 humidity 50.0 1440 > th dose independent rect. 3 4
315 244.48 atmosphere 995.0 1440 > th dose independent rect. 3 4
320 244.48 temperature 10.0 1440 > th dose independent rect. 7 20
328 244.66 humidity 50.0 270 > th dose dependent rect. 1 2
339 244.92 wind 9.0 270 < th dose independent rect. 5 19
351 245.06 radiation 20.0 10 < th dose dependent rect. 7 23
358 245.22 temperature 10.0 270 > th dose dependent rect. 24 4
363 245.31 wind 9.0 270 < th dose dependent rect. 5 19
369 245.36 atmosphere 1010.0 270 < th dose independent rect. 24 5
371 245.37 temperature 10.0 270 > th dose independent rect. 24 5
373 245.37 temperature 30.0 270 < th dose independent rect. 24 5
374 245.37 humidity 50.0 270 > th dose independent rect. 24 5
377 245.37 atmosphere 995.0 270 > th dose independent rect. 24 5
382 245.37 temperature 10.0 270 > th dose independent rect. 5 19
383 245.39 wind 9.0 270 < th dose independent rect. 24 5
399 245.66 wind 9.0 270 < th dose dependent rect. 24 4
413 245.95 radiation 30.0 14400 > th dose independent rect. 16 16
423 246.07 precipitation 0.1 270 < th dose independent rect. 24 5
424 246.07 precipitation 0.1 270 < th dose dependent rect. 24 5
476 246.73 atmosphere 1015.0 1440 < th dose independent rect. 3 4
477 246.73 humidity 80.0 10 > th dose dependent rect. 2 13
508 247.02 radiation 20.0 10 < th dose dependent rect. 10 20
539 247.48 humidity 50.0 270 > th dose dependent rect. 17 7
551 247.74 radiation 20.0 30 < th dose independent rect. 13 17
553 247.78 radiation 1.0 270 < th dose dependent rect. 15 9
560 247.91 radiation 1.0 270 < th dose independent rect. 15 9
586 248.10 temperature 10.0 270 > th dose dependent rect. 11 17
591 248.24 precipitation 0.1 10 < th dose independent rect. 6 20
592 248.24 precipitation 0.1 10 < th dose dependent rect. 6 20
610 248.43 radiation 40.0 4320 < th dose dependent rect. 18 9
615 248.48 atmosphere 995.0 10 > th dose independent rect. 6 20
625 248.71 temperature 10.0 270 > th dose dependent rect. 13 15
626 248.72 temperature 15.0 43200 > th dose independent rect. 5 2
643 249.01 temperature 15.0 43200 < th dose independent rect. 3 1
655 249.13 radiation 40.0 14400 < th dose independent rect. 17 15
661 249.28 temperature 15.0 43200 < th dose independent rect. 3 4
697 249.78 temperature 15.0 43200 < th dose independent rect. 5 1
773 250.40 radiation 30.0 14400 > th dose independent rect. 7 1
789 250.41 humidity 80.0 43200 > th dose dependent rect. 2 18
839 250.82 radiation 10.0 1440 < th dose independent sin 12 NA
842 250.83 atmosphere 995.0 270 > th dose independent rect. 5 19
869 250.93 humidity 90.0 43200 < th dose independent rect. 4 23
950 251.37 humidity 90.0 43200 < th dose independent rect. 24 23
954 251.40 humidity 90.0 43200 < th dose independent rect. 22 23
955 251.40 humidity 80.0 43200 > th dose dependent sin 3 NA
962 251.43 humidity 90.0 43200 < th dose independent rect. 18 23
965 251.44 humidity 90.0 43200 < th dose independent no NA NA
973 251.46 humidity 90.0 43200 < th dose independent rect. 13 23
977 251.46 radiation 30.0 14400 > th dose dependent rect. 15 17
981 251.49 humidity 90.0 43200 < th dose independent rect. 11 23